Gene detail information of Glyur002306s00034344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 3.00E-36 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KHN27791.1 | 2.70E-74 | TMV resistance protein N [Glycine soja] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 8.00E-46 | TMV resistance protein N |
| trEMBL | tr|A0A072TD92|A0A072TD92_MEDTR | 2.00E-73 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH15216.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02306 | 34026 | 35164 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002306s00034344.1 | PF01582.15 | TIR | 124 | 256 | 4.40E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.623 |
| SRR1783600 | control | 2.639 |
| SRR1783602 | moderate drought stress | 0.984 |
| SRR1811619 | moderate drought stress | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.658 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.124 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.134 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.002 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.846 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.655 |
| SRR2868004 | Drought Stress (root) | 0.739 |
| SRR2967015 | Control (root) | 1.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.367 |
| SRR9715740 | Leaf | 5.898 |
| SRR9715741 | Leaf | 5.399 |
| SRR9715739 | Root | 1.154 |
| SRR9715742 | Root | 4.633 |
| SRR9715743 | Root | 4.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.405 |
| SRR8749028 | MeJA induced 9h | 1.166 |
| SRR8749029 | MeJA induced 9h | 0.303 |
| SRR8749030 | Uninduced | 0.303 |
| SRR8749031 | Uninduced | 0.331 |
| SRR8749032 | Uninduced | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.165 |
| SRR8400027 | Control - Root | 8.408 |