Gene detail

Gene detail information of Glyur002306s00034340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	7.00E-08	disease resistance protein (TIR-NBS-LRR class), putative
NR	AES89817.2	3.15E-101	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
Swissprot	tr\|Q9SCX6\|RPS4L_ARATH	6.00E-06	Disease resistance protein RPS4 {ECO:0000303\|PubMed:10571887}
trEMBL	tr\|G7JCP8\|G7JCP8_MEDTR	1.00E-101	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES89817.2}

Sequence

Transcript Sequence

>Glyur002306s00034340.1
ATGCTATATGGACTAAGAAGCATACCCAACACCATATGTGGTTCCAACACACTTAAATATGTAAACCTTTCCGGCTTGTCCAAAGCGTTCAAGAATCCAATTAGGCATTTGGAGAAGCCTGATACAAGTGCAAGCACATCACATTCCCAATCAACATCCTCCATTATCTTCAAATGGATCACACTGTCTTCCTTGCCTAACTTATCTTGTTTGCGTGATCTTGATGTCAGTTTTTGCGGTCTAAGCCAAATCCCTGATGCTATTGGATGCCTACATTGGTTAGAAAGATTAAATTTAGGGGGAAACAATTTTGTGATACTGCCTAGTCTCGAGGAGCTCTCAAAACTTGTATATTTAAACTTGCAGCATTGCAAGCAGTTGAAATCTTTGCCTGGTCTCCCTTCATCACCTTCTGCTATGGAGCAGGGGAATAATCATATGCTAAATACCACAATCTTGGAAACAGGATTGTGTGTTTTCAACTGTCCTGAATTGGGTGATACGGAACGCTGCAGTAGCATGGCTTTTTCATGGATGATAAAGTTCATTCATGCAAACCAACATTCCACCTCCTTTAAGCAGATGGCAGTTGTTATTCCTGGAAGTGAAATTCCAAGGTGGTTCAACAATCAGGGAATGGGTGGGTCAACAAGCATAGACCCATTTCCCATTATGCATGACAATAATATCATTGGCATTGCTTGCTGTGCAGTATTTTATATTGCACCCGGTGATCCAACTACCCCAACAGATGAATGGATATCCAATCGACTATTGCTAACTGTCAATGATTGTTTGGAACTTTACGCGGCTTCAGTAATTATTGATCGAAAGCTTATTACTGTCAAATCAAATCACATGTATATAATGTATTTCCCTCGAGAAACATTCTTTGATATTCTGAGCGACGCATACAACAGACCCAGGGGTCATTATGATGTCCGAATGCATCAAACTTTTATTACGTTCCATGGTCCGCCTGTGGAGGTGATGAGCATCGGGTATCATTGGCTATTTACAGAGGATCTACAACCGATGCACTGTGAGAATTCGTTAGCTCGAAAGTGCAAGTTTTTGGCAATTGAAGAAGATAAGGCAGAGGAACAACCACAACCTGAACCATTCATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02306	26859	27989	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002306s00034340.1	PF13855.1	LRR_8	71	125	2.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.073
SRR1783600	control	18.873
SRR1783602	moderate drought stress	6.526
SRR1811619	moderate drought stress	6.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.075
DRR006520	Root Summer glycyrrhizin high producing strain	20.480
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.448

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.922
SRR2868004	Drought Stress (root)	0.453
SRR2967015	Control (root)	2.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.326
SRR9715740	Leaf	11.703
SRR9715741	Leaf	18.948
SRR9715739	Root	3.170
SRR9715742	Root	17.214
SRR9715743	Root	14.297

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.865
SRR8749028	MeJA induced 9h	1.832
SRR8749029	MeJA induced 9h	1.183
SRR8749030	Uninduced	0.507
SRR8749031	Uninduced	0.718
SRR8749032	Uninduced	0.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.201
SRR8400027	Control - Root	11.829