Gene detail

Gene detail information of Glyur002306s00034338

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-93	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003607620.1	0	Tir-nbs-lrr resistance protein [Medicago truncatula]
COG	YP_007098491.1	1.00E-12	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-113	TMV resistance protein N
trEMBL	tr\|G7JCP8\|G7JCP8_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES89817.2}

Sequence

Transcript Sequence

>Glyur002306s00034338.1
ATGGCTTGCAGTAGCATCCAAAGTAGCTCTCCAGCTCTGGTGGCAAGGACCATTTATGATGTTTTTGTCAGCTTCAGAGGTCAGGACACGCGCTACAATTTCACCGATCATCTCTTTGGTGCCTTCCAAAGAAAAGGTATTTTTGCATTCAGGGATGACACAAAGCTCAGGAAAGGCGAATCCATAGCGCCTGAGCTACTTTGTGCAATTGAAGGGTCTCGTGTTTATGTTGTGGTCTTCTCAAAGAACTATGCCTCCTCAACATGGTGCTTGCGGGAATTGGAAAAGATCCTCGAATGTACTCAATTATCCGAAAAACGTGTTCTGCCTATTTTCTGTGGTGTTGATCCATCTGAGAAGCCTTTGCCAAACATGAAGAAAGTTCAAACAACACTCAGAGATGGTGCAGAGATGGAGGGTAGCTCTAACACAAGGATTTGTGGGATGGGTGGAATCGGAAAGACAACTCTAGCTCATGCTTTATATGACGGAATCTCTCGTCAATTTGATGCATGTTGTTTTATTGATGATGTGAGCAAAATTTATAGACACGATGGTCCAATTGGGGCACAAAAGCAAATTCTATATCAAACTCTAGGTGGAGAACACCTTCAGATATGCAATCTTTATAATGCAACTAATTCAATGCGAAGTAGGCTACATCAAGTAAGGGCCCTTATAATTCTTGATAATGTTGATCAAACTCAACAACTGAAGAAACTAGCCATGAATCGTGAATGGTTAAGTGCAGGGAGTAGAATCATTATAGTTTCTAGAGATGAGCACATCTTGAAAGAGTATGGAGTAGATGCAGTTTACAAAGTTCCACTGTTGAATGGAGCTAACTCTCTTCAATTATTTTGTCGAAGAGCTTTCAAACTTGATAATATCATGAGTAATTATGAAGAGTTGGCATATGACATACTATATTATGCCGATGGCCTCCCACTAGCAATAGAAGTATTGGGCTCATTTTTGTTTGGCCGAAATATCGCTGAATGGAGAAGTGCATTGTCTAGATTGAGTGAAACTCCAAATAAGGATATCATGGATGTTCTACGACTAAGTTTTGATGGGCTAGAGAAAATGGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAATGATGATAAGGAGAAATATGTTAAAAGAGTTCTAAATTGTTGTGGATTTCATCCTGATATTGGATTAAGAGTTCTCATTGATAAATCACTTATAAGCATTTCAGACACAAGGTGGTTGTCTCCAGAAAGCAAGATTCAAATGCATGGTTTGCTGGAAGAGCTAGGCAAAAAGATTGTTCAAGAAGATTCAACCAAAGAGTTAAAAAAGTGGAGCAGGTTGTGGCTTGACAAACATTTCTATGATGTTATGTTGGAGAATATGGAAAAGAACGTTGAAGCCATTAAATTGAATGATGGAGATGGAATATTGATGGGTGAAGCATTGTCAAAAATGAGTAATGTTAGATTGCTCATAATCCAGGGTTTTTCAGGAAGCCTTACTTGTCTTTCTAATGAATTAAGATATGTTGAGTGGCACGACTATCCTTTCATGTATTTGCCATCAAGTTTTCAGCCCAGTCAACTTGTTGAACTTTCCTTAACGCGGAGCAACATCAAACAACTATGGAAAGGCAAGAAGCATCTGCCCAACTTGAGAGTTCTGGATCTGAGCCACTCCGAAAATTTAATCAAGATGCCAGATTTTGGAGAGGTCCCAAATCTTGAGCAACTAAATCTCGAAGGATGCATAAAACTTGTGCAGATAGATCCATCTATAGGTGTTCTAAGAAAGCTTGTTTTCTTGAATTTGAAAGATTGTGAAAATATTACTAGTTTACCCAACGACATATTTGGTCTCAACAATCTTGAATGTGTAAACCTTTCCGGCTTGTCCAAAGCGTTCATGAATCCAATTAGGCATGTGAAGAAGCTTGATACAAGTGAAACTGCATCACATTCCCAATCAACGTCCTCCATTATCTTCAAATGGATTACACTGCCTTTCCGTTCCTTGTATCCCAGAGCACATACAGTTTTGTTTCCTTCCTTGTCTAGCTTATCTTGTTTGCGTGTACTTGATGTTAGTTTTTGCAGTCTAAGCCAAATCCCTGATGCTATTGGATGCCTACATTGGTTAGAAAGATTAAATTTAGGGGGAAACAGTTTTGTGAGTCTGCCTAGTCTCGAGGAGCTTTCCAAACTTGAATATTTAAACTTGCAGTATTGCAAGCAGTTGAAATCTTTGCCTGATCTCCCTCCATCACCTTCTGCTATGGAGCAGCAGGAGGATTATGATGTGCTAAATCCCGGGATACGGGAAGCAGGATTGTATGTTTTCAACTGTCCTGAATTGGGTGATATGGAACGCTGCCGTAGCATGGCTTTTTCATGGATGATAAATTTCATTCATGCAAACCAACATTCCTCCTTCTTTAATCGGATTGCAGTTATTATTCCTGGAAGTGAAATTCCAAGGTGGTTCAACAATCAGAAAATGGGCAGGTCAACAACCATAGACCCATTTCCCATTATGCATGACAATAATATCATTGGCATTGCTTTCTGTGCAGTATTTTATGTGGCACCCAGTGATCCAACTACCACGAGAAATGAATGGAGAGATGAAATAAGGCTACGTTTTATTAGTGGTGGCTATCATATTAGGTTTGGTTGTGGGGCTTCAGTAATTATTAATCGAAAGCTTATTACTGTCAAATCAAATCACATGTTTCTAGTGTATTTCCCTCGAGAAACATTCTTTGAAATTCTGAGCAGTATACACCAAACACCCAGGGGTCTTTATGATGTCAAAATGCAGCAAACTTATATTGACTACCCATGTTTGGATATGGAGGTGATAAATTGTGGGTATCATTGGGTATTTAAAGAGGATCTACAAGGGATGCTTTGCGGGAATTCGTTAGCTCGGAAGCGCAAGTTTTTGGCAATTGAAGATAAGGCAGAGGAACAACCACAGCCAGAATCATTCATCTGATCAAAAGAGTAAAAGTTTTAGCAACTGCACTTTCCATCCAACTTTTAAAACTGCACAAAGGTTTGAGTTTGGAGGTTGGAATCATTCATCTGATTAAAGAATAAGATGAGCCTCAAATT

Protein Sequence

>Glyur002306s00034338.1
MACSSIQSSSPALVARTIYDVFVSFRGQDTRYNFTDHLFGAFQRKGIFAFRDDTKLRKGESIAPELLCAIEGSRVYVVVFSKNYASSTWCLRELEKILECTQLSEKRVLPIFCGVDPSEKPLPNMKKVQTTLRDGAEMEGSSNTRICGMGGIGKTTLAHALYDGISRQFDACCFIDDVSKIYRHDGPIGAQKQILYQTLGGEHLQICNLYNATNSMRSRLHQVRALIILDNVDQTQQLKKLAMNREWLSAGSRIIIVSRDEHILKEYGVDAVYKVPLLNGANSLQLFCRRAFKLDNIMSNYEELAYDILYYADGLPLAIEVLGSFLFGRNIAEWRSALSRLSETPNKDIMDVLRLSFDGLEKMEKEIFLHIACFFNDDKEKYVKRVLNCCGFHPDIGLRVLIDKSLISISDTRWLSPESKIQMHGLLEELGKKIVQEDSTKELKKWSRLWLDKHFYDVMLENMEKNVEAIKLNDGDGILMGEALSKMSNVRLLIIQGFSGSLTCLSNELRYVEWHDYPFMYLPSSFQPSQLVELSLTRSNIKQLWKGKKHLPNLRVLDLSHSENLIKMPDFGEVPNLEQLNLEGCIKLVQIDPSIGVLRKLVFLNLKDCENITSLPNDIFGLNNLECVNLSGLSKAFMNPIRHVKKLDTSETASHSQSTSSIIFKWITLPFRSLYPRAHTVLFPSLSSLSCLRVLDVSFCSLSQIPDAIGCLHWLERLNLGGNSFVSLPSLEELSKLEYLNLQYCKQLKSLPDLPPSPSAMEQQEDYDVLNPGIREAGLYVFNCPELGDMERCRSMAFSWMINFIHANQHSSFFNRIAVIIPGSEIPRWFNNQKMGRSTTIDPFPIMHDNNIIGIAFCAVFYVAPSDPTTTRNEWRDEIRLRFISGGYHIRFGCGASVIINRKLITVKSNHMFLVYFPRETFFEILSSIHQTPRGLYDVKMQQTYIDYPCLDMEVINCGYHWVFKEDLQGMLCGNSLARKRKFLAIEDKAEEQPQPESFI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02306	6534	10401	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002306s00034338.1	PF01582.15	TIR	21	132	2.50E-27
Glyur002306s00034338.1	PF00931.17	NB-ARC	126	392	5.40E-39
Glyur002306s00034338.1	PF00560.28	LRR_1	600	620	0.73
Glyur002306s00034338.1	PF00560.28	LRR_1	692	711	0.34
Glyur002306s00034338.1	PF00560.28	LRR_1	715	733	0.6
Glyur002306s00034338.1	PF00560.28	LRR_1	736	753	0.46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.667
SRR1783600	control	6.734
SRR1783602	moderate drought stress	6.533
SRR1811619	moderate drought stress	6.459

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.352
DRR006520	Root Summer glycyrrhizin high producing strain	4.203
DRR006521	Root Winter glycyrrhizin high producing strain	2.068
DRR006522	Root Winter glycyrrhizin high producing strain	2.149
DRR006523	Root Summer glycyrrhizin low producing strain	0.009
DRR006524	Root Summer glycyrrhizin low producing strain	0.024
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.849

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.028
SRR2868004	Drought Stress (root)	0.024
SRR2967015	Control (root)	0.154

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.777
SRR9715740	Leaf	5.995
SRR9715741	Leaf	7.141
SRR9715739	Root	0.547
SRR9715742	Root	5.598
SRR9715743	Root	3.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.998
SRR8749028	MeJA induced 9h	2.534
SRR8749029	MeJA induced 9h	0.199
SRR8749030	Uninduced	1.204
SRR8749031	Uninduced	0.211
SRR8749032	Uninduced	0.233

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.126
SRR8400027	Control - Root	14.848