Gene detail information of Glyur002306s00034336 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51630.3 | 3.00E-40 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KEH30729.1 | 3.41E-141 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 3.00E-42 | TMV resistance protein N |
| trEMBL | tr|A0A072ULS0|A0A072ULS0_MEDTR | 1.00E-141 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH30729.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02306 | 3 | 3384 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002306s00034336.1 | PF01582.15 | TIR | 6 | 53 | 1.10E-05 |
| Glyur002306s00034336.1 | PF00931.17 | NB-ARC | 94 | 241 | 1.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.667 |
| SRR1783600 | control | 3.571 |
| SRR1783602 | moderate drought stress | 4.248 |
| SRR1811619 | moderate drought stress | 4.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.837 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.025 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.419 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.970 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.475 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.118 |
| SRR2868004 | Drought Stress (root) | 4.108 |
| SRR2967015 | Control (root) | 5.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.924 |
| SRR9715740 | Leaf | 1.360 |
| SRR9715741 | Leaf | 2.196 |
| SRR9715739 | Root | 0.140 |
| SRR9715742 | Root | 1.293 |
| SRR9715743 | Root | 0.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.270 |
| SRR8749028 | MeJA induced 9h | 0.210 |
| SRR8749029 | MeJA induced 9h | 0.108 |
| SRR8749030 | Uninduced | 0.014 |
| SRR8749031 | Uninduced | 0.047 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.874 |
| SRR8400027 | Control - Root | 4.138 |