Gene detail information of Glyur002304s00046375 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38640.1 | 3.00E-43 | Protein of unknown function (DUF567) |
| NR | XP_009337833.1 | 5.97E-86 | PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri] |
| Swissprot | tr|Q9ZVI6|LOR8_ARATH | 9.00E-62 | Protein LURP-one-related 8 |
| trEMBL | tr|M5W4C8|M5W4C8_PRUPE | 1.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:EMJ08549.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02304 | 34066 | 35439 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002304s00046375.1 | PF04525.7 | Tub_2 | 26 | 213 | 1.40E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.295 |
| SRR1783600 | control | 3.282 |
| SRR1783602 | moderate drought stress | 1.570 |
| SRR1811619 | moderate drought stress | 1.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.370 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.930 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.818 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.902 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.936 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.443 |
| SRR2868004 | Drought Stress (root) | 46.678 |
| SRR2967015 | Control (root) | 33.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.037 |
| SRR9715740 | Leaf | 0.038 |
| SRR9715741 | Leaf | 0.035 |
| SRR9715739 | Root | 0.134 |
| SRR9715742 | Root | 0.912 |
| SRR9715743 | Root | 0.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.476 |
| SRR8749028 | MeJA induced 9h | 5.328 |
| SRR8749029 | MeJA induced 9h | 0.907 |
| SRR8749030 | Uninduced | 2.246 |
| SRR8749031 | Uninduced | 2.707 |
| SRR8749032 | Uninduced | 3.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.034 |
| SRR8400027 | Control - Root | 0.466 |