Gene detail

Gene detail information of Glyur002303s00038706

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18670.1	4.00E-67	Ankyrin repeat family protein
NR	XP_003612741.1	0	hypothetical protein MTR_5g028390 [Medicago truncatula]
Swissprot	tr\|Q9C7A2\|Y3236_ARATH	4.00E-06	Ankyrin repeat-containing protein At3g12360
trEMBL	tr\|V7CJD8\|V7CJD8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30224.1}

Sequence

Transcript Sequence

>Glyur002303s00038706.1
TGAAAGGGGACAAAAAATATATATTTTCTTAAACTTGCCTTCAATTTCATCATCCAATCCAAATATATACCGCAGAAAAGAAACACACACACACATATTTAACAGAGAAAAAGAGAAGCGAAAGCAAAGATATATATGATCTGTTTGGCTATTTATTCCCAGATTGTGAATTTGCAGTACATAATGGCAGCTACAAGCAGTGCAGCCAGTGGAATAGTTCTTGAAACACTCACAAAAGACAACTACGACAACTGGAGTGCTCTTGTGAAAAACTATCTAATAGGGCAAGGTCTGTGGGGCGTTGTCAAGTCAGATCCTGGAACTGGCGGTGGGAATTCCACTGTTGATCCAAAGATTTGGGAGAGGAAGAATGCGAAGGCATTGCATGCCATTCAACTTGCGTGCGGATCAGAGATTACTCATATTAGAGAAGTTGAGAAGGCCAAAGAAGCCTGGAATAAATTGAGCGCCTTATACAGCTCAAAATTAAAAGCCGACCCAGATATTGAGCAAGGTTTGGTGGACGACAGTCTCCTTCACAATAAATCGCTGCACAAGTACATCGAGAGCGGTGTGTGGAATGATGCAAAATCATTCATCAACAAGACAAAGCAGGCTATATATTCCACATCCTCTTTGGGGAGGAGCGTTCTTCACGTTGCCGTAATTGCTGGGCACGAGGAGATTGTGAAGGAGTTGGTGAAGATAGGGGGCGACAAATTAGTAAAGATACAAGACAACCGTGATTACACGGCACTTGCTGTTGTTGCTGAGCTAACTGGAAACACCAAGATAGCAAAGTACATGATAGAGAGGAGGCAAAGGAATGTCGTCAACGAACTTCTATCTATGAAGCCCAAAGACAGTGAAATCCCCGTGCTTCTTGCTGCTGCTAAGGGGCACAAAGAAATGACTCGCTATCTCTTCACTAAAACTCCGTTGGAAGAGTTAAAAGACAAAAACTCCCACAACGGCATTTTGCTTCTTACCCGATGTATCACCGCCGAAATATTTGATGTGGCTTTGAGTTTACTCCAACTCATTCCGAATTTGCCTCTTGCCCATAAATCTGATGGCGTACAACCCTTGTACGCATTGGCACGCATGCCTTCTGCGTTCCCAAGTGGCAGCGGATTTGGACTCCTACGCCAATTCATTTACAATATTTTTAGACGAGAAACACCAGACAGAATAGTGCAGAAATTGCAGACAAATGTTGTTCAAGAGGGAAAACAATGTAAAAGTTGTTTCGCAGGATTAATAAGGGAAATATATAATCAGAAAGTGACCCACATTCTAGTTCATGAAATATTGAAATGTTTGTACCAAAGAATTGGGGAATTTAAGGAATCAGAACTCGAAGAGGCTTCGGCGTACGATGCCATGTTGCAAGCAGCCAAGAATGGAATCGTTGAGTTCATAGATATAATGAGGAAGGCTAACCCTGACCTCTTATGGGCCATTGACAAAAACAAGAGAGGTATATTTTCGCATGCAATTTTGAATCGTAGAATAGCGATCTTCCAACTCATACATGATCCAACTGTAAATGGACGAAAGGAGATAACGAATTTGGCAATACCCTGTTGCACCTGGCAGGATATTTGGGCCCTTCCTCTGATCTTGATCGCAGATCCGGCTGTGGAGAAAATTGTGCACCCCAAGTGTAAGGAGACAAAAAATAAGGATGGTAAGAAGCCCCGTGAGGTATTTACCGAAAGCCACAGGGAGCTGGTGAAAGCTGGTGAGAAATGGTCAAAAGAAACAGCCGGTTCATTTGCACTTGTGGCTACTCTCATCACTACCATCATGTTCGCTGCGGCCTTCACCGTCCCCGGTGGCAACAATCAAGTAACTGGAGTACCCCTTTTCTTGCGTGACAAGATGTTCACTGTGTTCATGATAGCAGATGCAATATCTCTTTTCACTTCTTCCACTTCAGTTCTGCTCTTCATTGGCATTCTCACTTCGCGTTACGCTGAAAAGGATTTCCTCAGGGCCTTGCCTCTGAAGTTTCTACTTGGCCTTGTCTTCCTTTTCGTCTCTGTCGTGTCCATGATTCTTGCCTTTTGTGCCTCGCTTGCTATGATCCTAAAGGGACATCAGGGTGTCAGAATAGCAGCCATGTCACTTGGGAGTATTCCAGTTATCGTCCTTGTACCATCGCAGTTCCGCCTCTTCCTTGAGATTTTTAACTCTACAATTAATAAGATCGAATAATTAATGCACAATGATACATAGCAAGTGCTAACGGCTGTACAATGATTTTGTTTTGAATTCATATTCATTCAATCTGGAACAAGCATCAGCTAGTTGTCGGAAATCCTTTCAGATAAGTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02303	19867	25865	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002303s00038706.1	PF13961.1	DUF4219	32	58	1.00E-08
Glyur002303s00038706.1	PF12796.2	Ank_2	151	227	3.40E-07
Glyur002303s00038706.1	PF13962.1	PGG	538	650	2.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.839
SRR1783600	control	44.639
SRR1783602	moderate drought stress	24.626
SRR1811619	moderate drought stress	24.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.286
DRR006520	Root Summer glycyrrhizin high producing strain	8.249
DRR006521	Root Winter glycyrrhizin high producing strain	0.085
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.656
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.604

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.016
SRR2868004	Drought Stress (root)	3.547
SRR2967015	Control (root)	8.164

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.190
SRR9715740	Leaf	0.272
SRR9715741	Leaf	0.185
SRR9715739	Root	11.898
SRR9715742	Root	22.764
SRR9715743	Root	21.527

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.074
SRR8749028	MeJA induced 9h	0.052
SRR8749029	MeJA induced 9h	0.005
SRR8749030	Uninduced	0.122
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.387
SRR8400027	Control - Root	31.772