Gene detail

Gene detail information of Glyur002303s00038705

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18670.1	3.00E-42	Ankyrin repeat family protein
NR	AES95705.2	4.74E-102	ankyrin repeat protein [Medicago truncatula]
Swissprot	tr\|Q9LUJ5\|EBP2_ARATH	5.00E-23	Probable rRNA-processing protein EBP2 homolog
trEMBL	tr\|G7KAX7\|G7KAX7_MEDTR	2.00E-102	Ankyrin repeat protein {ECO:0000313\|EMBL:AES95705.2}

Sequence

Transcript Sequence

>Glyur002303s00038705.1
ATGAAAGGCACAAGTGTTGCCTCCAGTGGAATAGTTCATGAACTACTCACTAGAGACAACTACGAAGGATGGAGAGTTGTTATGCAAAACTATCTGCAGGGGCAAGGTCTCTGGGACGTTGTTCAGACTGCTAATTCTGAACATGGACTTGAGGCTTTGGAGAAGATGGAGATCGATGATGCAAAGGCCAAAAAATTCTGGAATATCTTGAGCGCCCAAAACAGCACGGAGTTAAAAGCCGCCCCAGACATCGAGCAAGGTGCGTATTTAGATGCGGTGGAAGAATTTGTGCATCCTTTGTGTAAGGAAGCCAAAAATGGGGATGGTAAGAAGCCTCGTGAGCTATTCACTGAAAACCACAAGGAGCTAATGAAAGCGGGAGAAAAATGGGCGAAGGATATAGCCACATCTTTCACAATTGTTGGAACTCTCATCACTACCATCATGTTTGCTGCGGCCTTTACTGTCCCGGGTGGAAACAATCAAGAAACTGGACTTCCTATTTTCTTGCACGACAAGATATTCACCACGTTTCTCGTAGCAGATGCGGTGTCCCTCTTCACTTCTGCCACTTCAGTCATTGTATTCATTGGGATTCTCACATCGCGTTATGCTGAGCAAGACTTCCTCAAGAGCTTGCCTTGGAAGTTACTCTTCGGCCATCTGCCCCTGATTCTCTCTGTTTGCTCCATGATAGTTGCTTTTTGTGCTGCACTCGCTATAATCTTAAAGGGATATCGAACCTATAGTTGGTTTGTTGTAGGACCCGCTCTGTCACTTGCGAGTATTCCAATTATCGTCCTCGTAGCATCGCAGCTGAGCCTCATGTATGACATTTTCTATTCTACCTGGAAAAATCCCATTCGTTCTGTTAGTGGTGGAAAACCCGGAAGCAGAGGCAGGCAACAGAGTGGGTTTACTGATCATGACAGCACCATTAATGATGCAGATAAGGTTTTGGATTTTGAAGATGGGAAAGTGTTTGAGAGATCAAAGAAGAAAAGGCCCGGAGTGTCTCCAGGCGATCGACCAGGAGGAAAGGCAAAGCAAGCCATTGGAAAGGGAGAGAAGCAAAAGAAAAGAGATGTTAGGAACTCCAGATTTGGTTTCGGAGGCAGGAAGGGATTGAAGAAGCAGAATACTGCTGGCACCACTATTGATTTTAGTGGACTCAACAAGGGTGCTGCTGCAGGAAATAAGAAGAGGAAAAGGGATGTCATGGAATGTGCCAATGGCGCAATCCCGAGAACTTTCATCAACTCTTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02303	14440	18559	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002303s00038705.1	PF13961.1	DUF4219	16	41	9.30E-09
Glyur002303s00038705.1	PF13962.1	PGG	128	241	2.20E-22
Glyur002303s00038705.1	PF05890.7	Ebp2	315	403	2.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.303
SRR1783600	control	12.340
SRR1783602	moderate drought stress	12.752
SRR1811619	moderate drought stress	11.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.048
DRR006520	Root Summer glycyrrhizin high producing strain	0.084
DRR006521	Root Winter glycyrrhizin high producing strain	0.878
DRR006522	Root Winter glycyrrhizin high producing strain	0.679
DRR006523	Root Summer glycyrrhizin low producing strain	13.665
DRR006524	Root Summer glycyrrhizin low producing strain	14.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.667
SRR2868004	Drought Stress (root)	18.980
SRR2967015	Control (root)	20.474

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.028
SRR9715740	Leaf	0.308
SRR9715741	Leaf	33.772
SRR9715739	Root	0.015
SRR9715742	Root	9.471
SRR9715743	Root	7.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.456
SRR8749028	MeJA induced 9h	3.495
SRR8749029	MeJA induced 9h	2.414
SRR8749030	Uninduced	4.135
SRR8749031	Uninduced	2.847
SRR8749032	Uninduced	3.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.739
SRR8400027	Control - Root	8.393