Gene detail information of Glyur002303s00038704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22660.1 | 3.00E-66 | rRNA processing protein-related |
| NR | XP_004512466.1 | 7.64E-175 | PREDICTED: probable rRNA-processing protein EBP2 homolog [Cicer arietinum] |
| Swissprot | tr|Q9LUJ5|EBP2_ARATH | 4.00E-117 | Probable rRNA-processing protein EBP2 homolog |
| trEMBL | tr|G7KAW7|G7KAW7_MEDTR | 3.00E-160 | rRNA-processing EBP2-like protein {ECO:0000313|EMBL:AES95695.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02303 | 9140 | 10009 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002303s00038704.1 | PF05890.7 | Ebp2 | 16 | 286 | 1.50E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.730 |
| SRR1783600 | control | 2.507 |
| SRR1783602 | moderate drought stress | 5.016 |
| SRR1811619 | moderate drought stress | 4.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.928 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.193 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.497 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.186 |
| SRR2868004 | Drought Stress (root) | 6.229 |
| SRR2967015 | Control (root) | 7.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.532 |
| SRR9715740 | Leaf | 3.911 |
| SRR9715741 | Leaf | 4.048 |
| SRR9715739 | Root | 1.340 |
| SRR9715742 | Root | 5.253 |
| SRR9715743 | Root | 6.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.323 |
| SRR8749028 | MeJA induced 9h | 2.726 |
| SRR8749029 | MeJA induced 9h | 2.517 |
| SRR8749030 | Uninduced | 1.146 |
| SRR8749031 | Uninduced | 0.516 |
| SRR8749032 | Uninduced | 1.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.471 |
| SRR8400027 | Control - Root | 8.836 |