Gene detail

Gene detail information of Glyur002299s00036267.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20710.1	0	beta-galactosidase 7
NR	XP_003595331.1	0	Beta-galactosidase [Medicago truncatula]
COG	YP_003160083.1	3.00E-27	beta-galactosidase [Jonesia denitrificans DSM 20603]
Swissprot	tr\|Q9SCV5\|BGAL7_ARATH	0	Beta-galactosidase 7 (Precursor)
trEMBL	tr\|G7IIN1\|G7IIN1_MEDTR	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur002299s00036267.1
CTGATTTGATAAAAAAGGCAAAAGAAGGAGGATTGGATGCCATTGAAACATATGTTTTCTGGAATGCACATGAACCTATTCGTCGTGGGTATGATTTCAGTGGCAATAATGATCTCATTAGATTTCTCAAGACCATTCAAGATGAAGGACTTTATGCTGTACTTCGCATTGGTCCCTGCCGAATGGAACTATGGAGGGATCCCTGTGTGGGTTTACAATCTACCTGGTGTCGAGATTCGAACGGCAAATCAAGTCTACATGAACGAAATGCAAAATTTTACTACTTTGATAGTGGATATGGTCCAAAAAGAGAAACTATTTGCTTCTCAAGGCGGTCCCATAATTCTATCTCAGATCGAGAATGAATATGGGAATGTGATGCCGACTTATGGGGACGCTGACAAAGCTTATATAGATTGGTGCACAAACATGGCCGAGTCCTTTAACATTGGGATCCCGTGGATCATGTGCCAACAACTTGATGCTCCCCAGCCAATGATCAATACTTGTAATGGATGGTATTGTCACGAGTTCGAACCCAATAGCCTTAACAGTCCCAAGATGTGGACTGAAAATTGGGTTGGCTGGTTCAAGAATTGGGGTAGCAAAGATCCACACAGAACTGCGGAAGATGTTGCCTATGCTGTGGCAAGGTTTTTTCAAACCGGAGGCACATTCCAAAACTATTATATGTATCATGGTGGAACTAATTTTGGCAGAACAGCTGGTGGTCCATACATTACCACTTCATATGATTATGATGCTCCTCTTGATGAATATGGAAACATTGCCCAACCAAAATGGGGTCACCTCAAAGAACTTCATAAGGTTCTGAAGTCAATGGAGAATAGTCTCACCAATGGAAATGTATCTGAAATTGATTTTGGCAACTCTGTGAAGGCTACTGTGTATGCCACAAATGATTCATCAAGCTGCTTCTTGAGCAACACTAACACCACCACTGATGCCACAATAACATTTAGAGGAAATACATATATTGTTCCTGCATGGTCTGTTAGCCTTCTTCCTGATTGTCAAGCTGAAGAGTACAACACAGCCAAGGTAAACGTTCAAACTTCCCTCAAGGTAAAGCGAGAAAACAAAGCTGAAAATGAGCCAAGGGCTTTGAAGTGGGTGTGGAGAGCCAAGAACATTGATGATGCTCTGTTTGGGAAGGCTAGTGTCTCTGCAAATGCACTTATTGATCAAAAAAGAGCTGCTAATGATTCAAGTGACTATCTTTGGTACATGACAAGGATTAATGGCAGTGGACATGTAATTCATGCATTCATCAACGGAGAACATATTGGCTCTCATTGGGCCACATATGGCATTCACAATGATAAATTTGAGACCAACATTAAGTTGAAGCCAGGGAAGAATGTTATCAGCCTACTTAGTGTCACCGTTGGACTTCAGAACTATGGGAAAAACTATGATAAATGGCATGCCGGTCTTGTTGGGCCTATTGAGGTGATTGGTAAAAAAGGTGACGAGACCGTCATTAAGGATCTGTCCTCACACAACTGGACTTACAAGGTTGGGTTGCATGGTTGGGACAACAGAATTTTCAGTGAAGATTCACTCTTTGCTTCTGCTTCCAAATGGGAATCTGACCAGCTACCCATTAATAGGATGTTCACTTGGTACAAGACCGCTTTCAAAGCTCCTCTAGGATTAGACCCTGTTGTTGTGGATTTGCAATGTATGGGAAAAGGCTATGCTTGGGTGAATGGTCAGAGTCTCGGTCGCACTTGGCCTAGTTATGATGCAGATGAGGATGGTTGTAGTGATGATCCTTGTGATTACCGTGGCGAATATAGTGACACAAAATGTGTTACCAATTGTGGCAAGCCCTCACAGAGATGGTTTGTACCATGTCCCTCTATCCTTATTCAAGATGGTGTTAACACATTGGTATTGTTCGAGGAAATTGGTGGTAATCCATCACTAGTAAATTTCCAAACAGTTATTGTTGGCACTGCTTGTGGACATGCTTGTGAGAATAAGACTTTGGAACTATCTTGTCATGGTCGTCCCATCTCGGCTATAAATTTTGCAAGTTTTGGGAACCCACAAGGTTTATGTGGAGCATTTAGCAAGGGCAGTTGTGAAAGCAATAACGATGCTTTGTCTGTTGTTCAAAATGCATGTGTGGGCAAGGAATCATGCTCAATTGATGTTTCAGAAAAAACATTTGGCCCAACAAATTGTGGAGATATAGTCAAGAGGCTAGCTGTCGAAGCAATTTGTTAGGACTTTAGTTGGGTACATAAATTAGGCTGATCTTCCACACCCTAGGTTTTTTTTTGTCTTGTCTGGGTTTATCTTTGGGCCTTTTTGTTGTAGGCTTCGGATCCCAGTTTTTCAGACAAAAAATATTTAGTCTATATAGTTTAATTTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02299	39736	44082	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002299s00036267.1	PF01301.14	Glyco_hydro_35	46	264	6.30E-70
Glyur002299s00036267.1	PF02140.13	Gal_Lectin	662	739	5.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.791
SRR1783600	control	1.812
SRR1783602	moderate drought stress	5.535
SRR1811619	moderate drought stress	5.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.084
DRR006520	Root Summer glycyrrhizin high producing strain	9.316
DRR006521	Root Winter glycyrrhizin high producing strain	15.169
DRR006522	Root Winter glycyrrhizin high producing strain	14.832
DRR006523	Root Summer glycyrrhizin low producing strain	2.902
DRR006524	Root Summer glycyrrhizin low producing strain	2.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.318
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.737
SRR2868004	Drought Stress (root)	5.449
SRR2967015	Control (root)	6.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.311
SRR9715740	Leaf	0.580
SRR9715741	Leaf	14.875
SRR9715739	Root	0.308
SRR9715742	Root	7.020
SRR9715743	Root	4.718

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.721
SRR8749028	MeJA induced 9h	15.060
SRR8749029	MeJA induced 9h	14.096
SRR8749030	Uninduced	22.150
SRR8749031	Uninduced	24.752
SRR8749032	Uninduced	26.889

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.189
SRR8400027	Control - Root	3.147