Gene detail information of Glyur002299s00036262.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19180.1 | 8.00E-30 | jasmonate-zim-domain protein 1 |
| NR | XP_004488102.1 | 3.79E-106 | PREDICTED: protein TIFY 10A-like [Cicer arietinum] |
| Swissprot | tr|Q9LMA8|TI10A_ARATH | 3.00E-34 | Protein TIFY 10A |
| trEMBL | tr|I1L1S4|I1L1S4_SOYBN | 2.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G08290.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02299 | 11739 | 14933 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002299s00036262.1 | PF06200.9 | tify | 149 | 181 | 5.50E-16 |
| Glyur002299s00036262.1 | PF09425.5 | CCT_2 | 255 | 281 | 2.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 122.247 |
| SRR1783600 | control | 121.771 |
| SRR1783602 | moderate drought stress | 60.347 |
| SRR1811619 | moderate drought stress | 60.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 285.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 278.607 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.804 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.442 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 336.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 337.381 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 77.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 144.461 |
| SRR2868004 | Drought Stress (root) | 286.064 |
| SRR2967015 | Control (root) | 189.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 619.451 |
| SRR9715740 | Leaf | 605.112 |
| SRR9715741 | Leaf | 739.901 |
| SRR9715739 | Root | 361.959 |
| SRR9715742 | Root | 440.426 |
| SRR9715743 | Root | 416.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 134.704 |
| SRR8749028 | MeJA induced 9h | 167.551 |
| SRR8749029 | MeJA induced 9h | 217.632 |
| SRR8749030 | Uninduced | 556.509 |
| SRR8749031 | Uninduced | 869.408 |
| SRR8749032 | Uninduced | 570.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 104.362 |
| SRR8400027 | Control - Root | 135.024 |