Gene detail

Gene detail information of Glyur002298s00031163

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08540.1	9.00E-33	RNApolymerase sigma subunit 2
NR	XP_006577887.1	1.94E-132	PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
COG	YP_007134424.1	3.00E-13	RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|O22056\|SIGB_ARATH	1.00E-56	RNA polymerase sigma factor sigB (Precursor)
trEMBL	tr\|K7KHD7\|K7KHD7_SOYBN	7.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G00330.2}

Sequence

Transcript Sequence

>Glyur002298s00031163.1
TGAAGGGAGTGAGTTTGTGTGTGTGAGGGGAGGGGAGGGGAGTAAGGAATTGATGAGGCAGTTTGGGATTCAATTTTCAACCTCAACCTCTTATCCGGATTGGGATGGGATGGGATGGGGTGTTGTATTGTGTTGTGTCAACCAGCCAGAGAGAGAGAGAGAGAGAGAGCGCCCAGACCAGAAAGGAGAAGAAGAACAATAGAAACTAGAAAGCACCCCAACCCAAGTGAAGTGAACCAGAACCAGTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTAATATTTTATAACAAGGAATTTGGGACGCCTCCGCGTCCGCCTCCGCGAACCGCTTCCTCCTATATCCCATGACTGATGACACCCCTCACTCTCATTCAGACACTTAACGAAACAGTTGTACGTTGTTGTTCGCCTTAGCGGTGGGACTCGGGAGGGAGAATGTCGTGTTTATTGCCGCACTTCCAGTTCAAGTGCCACCACCCCGACACTTTCAGAACTCATCCCCATCCCCATCNCCATCACCACCACCACCACCTTTTTCTTCTTCTATGTACGAAGTCAAGACAGAATTGTATTCTCTCTGCCGCATCTCCTTCCACTTCAGCACCCACCGCACTCCTTAATTTGGAATCAGAGTTGGCATTCGATGCTGCAACTGCAAACACACCTTGGTCCTTCGTCGCTCAGGCAAACTTTAAAGCAACCTCATCTACAGAATCACTTCTTACTAGTGAAGAGGCTGTAATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAAGCTGCTGCAAAGGTTGCAAAGGATGCCGCTCTTTTAGTAAAAACGAAGCCTCCGGCAGAAGCAGGGTATAGATCACAAGTTTCTTCCACATCTGATAATTTACTCCTCAAATGGGTTCAACACATGGAAGCAGAAGATGTNGTGGCAGGAGGATCCATGGGCACTGGAGCAGAAATAATGGAAGATGCTGACATAAACCCNGGCCAAGAGGAGTTTGATGATGAAGAGCTTACCTGTGACGAACTTGAGCATGTGGAGGAACTGCTTTCCGATAGTATAGCTGCAAGATCTAGTCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCGGCTGAGAAGGCCACCACAAATATTGTGGCTTTTAAGTCTGGCTCCACTGGCAGGAAAAAGCGTGTTCCTAAGCAAGAAGTGGACTATTCTGATCCACTTCGTTACTTAAGAACAACAACTAGAGCTACCAAGCTTCTTACCCCAGCTGAAGAAATAAAGTTGTCTGAAGGAATACAGGACCTGATAAAGCTTGAAAAACTCCAGGAGGATCTTGCAGAAAAATGTGGTGGTCAGCCCACATTTGCTCAATGGGCTGCAGTGGCAGGATTAGATCAGAAGACCCTGAGAAAACGTTTAAATTATGGTGTATTCTGCAAAGAAAAGATGATTAAAAGCAATATACGACTTGTCATATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02298	40854	43893	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002298s00031163.1	PF00140.15	Sigma70_r1_2	255	290	9.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.400
SRR1783600	control	9.458
SRR1783602	moderate drought stress	25.927
SRR1811619	moderate drought stress	26.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.212
DRR006520	Root Summer glycyrrhizin high producing strain	6.449
DRR006521	Root Winter glycyrrhizin high producing strain	4.585
DRR006522	Root Winter glycyrrhizin high producing strain	4.674
DRR006523	Root Summer glycyrrhizin low producing strain	6.708
DRR006524	Root Summer glycyrrhizin low producing strain	7.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.197
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.432

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.211
SRR2868004	Drought Stress (root)	5.394
SRR2967015	Control (root)	6.359

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.655
SRR9715740	Leaf	29.834
SRR9715741	Leaf	19.909
SRR9715739	Root	2.995
SRR9715742	Root	6.938
SRR9715743	Root	6.378

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.984
SRR8749028	MeJA induced 9h	7.539
SRR8749029	MeJA induced 9h	2.822
SRR8749030	Uninduced	1.744
SRR8749031	Uninduced	0.257
SRR8749032	Uninduced	0.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.260
SRR8400027	Control - Root	10.643