Gene detail

Gene detail information of Glyur002298s00031162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17670.1	1.00E-101	alpha/beta-Hydrolases superfamily protein
NR	AFK45991.1	4.00E-179	unknown [Lotus japonicus]
COG	YP_003887260.1	5.00E-34	hypothetical protein Cyan7822_2003 [Cyanothece sp. PCC 7822]
trEMBL	tr\|I3T0E9\|I3T0E9_LOTJA	1.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:AFK45991.1}

Sequence

Transcript Sequence

>Glyur002298s00031162.1
CTGAGTTGACAGTTGTCGTGGTTGTGTTGTAAAAGTAAAAGGGCAATTAAGGCAATGAGAATATGTTGGTTTGTGTTGTGTGGAGCGAAATGGATGTGAGTCTCTCCATCCGTTGGCAGAGGCAGAGACCCAAATGCTCAAACCCATCATCACCGCTTTCTTCCTCCAACTCCAACTCCAACTCCAACTACCGCCCCGCCGTTATTCTCCCGGGGTTAGGGAACAATTCCGGTGACTACCGCAAGTTGGAGCAGACGCTGAAGGACAAGTACGGCGTCCCCACCGCGGTGGCCAAGGTCTCCAGACTCGACTGGCTCNGAAATGCCGCCGGTTTGCTCGACCCCAATTACTGGCGTGCCACCCTTCAACCAACCCCTGTCCTCCACTGGTATCTCAAGAGGGTTCATGATGCTGTTCAAGAGGCCAAGGAGGAGTTGGCACCTGCAGGTTCCACTCTGTCATTGATTGGGCACTCCGCGGGAGGATGGCTTGCTCGTGTGTACATGCAAGAATTTGGGCACTCCCATATTTCCCTCTTGTTGACTCTTGGAACCCCTCACCTTCCACCCCCAAAAGGCGTGCCCGGTGTTATTGATCAAACTCGGGGTCTCCTTGACTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACCCCTCAACTGAAGTATGTTTGTGTAGCAGGAAGGTATATTGAAGGGGCTCGGTTTTTTGGCAAGTCAAATCCAAATGTTGAGGCTGTAGTTCCTACCAATAGTTCTCAGCTGGTTCCTGAGGCCGCTATCATGAACACTGCAAGCACTTCTTCACCCAACANAACATTACGTGCTCGCTTTGTTGGGCAAGGATACAAGCAGGTATGTGGGCAAGCAGATGTATGGGGCGATGGTGTTGTGCCAGAAGTATCAGCTCATCTTGAGGGGGCACTTAACATTTGCTTGGATGGAGTTTATCACTCACCNGTTGGTTCGGATGATGCACTGAGACCATGGTATGGTTCCCCTGATGTGGTGGAACAATGGATACAACACCTCCTTGATTAGCTTGAAGATTAGAGCATTTCATCTAAGTAATTATGCCACTATATTATATAATGATTTTCATTTTTTTTTTCTCCCTTTCTTCTTGTATTTGTGGCGTTGGATTCGGTTAATGTTTAGTTCATTACAAAGTCATCAGTATGACTGATACTATACGGCATGAGTCCGAAGTCTTTTCAAGGTTAATTTAGGTAGATTAATAAACTTTCAATTGATGTAAAATATTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02298	37112	39348	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006505 GPI anchor metabolic process

GO:0006886 intracellular protein transport

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002298s00031162.1	PF07819.8	PGAP1	117	207	4.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.753
SRR1783600	control	0.800
SRR1783602	moderate drought stress	0.412
SRR1811619	moderate drought stress	0.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.437
DRR006520	Root Summer glycyrrhizin high producing strain	0.508
DRR006521	Root Winter glycyrrhizin high producing strain	0.262
DRR006522	Root Winter glycyrrhizin high producing strain	0.247
DRR006523	Root Summer glycyrrhizin low producing strain	0.509
DRR006524	Root Summer glycyrrhizin low producing strain	0.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	72.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.839
SRR2868004	Drought Stress (root)	3.466
SRR2967015	Control (root)	2.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.394
SRR9715740	Leaf	72.146
SRR9715741	Leaf	40.636
SRR9715739	Root	0.055
SRR9715742	Root	0.049
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.690
SRR8749028	MeJA induced 9h	7.736
SRR8749029	MeJA induced 9h	5.020
SRR8749030	Uninduced	2.347
SRR8749031	Uninduced	0.763
SRR8749032	Uninduced	1.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.920
SRR8400027	Control - Root	2.281