Gene detail information of Glyur002298s00031158 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12230.1 | 1.00E-30 | |
| NR | XP_007049519.1 | 3.81E-71 | Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] |
| Swissprot | tr|Q6NQD9|MD19B_ARATH | 3.00E-47 | Probable mediator of RNA polymerase II transcription subunit 19b |
| trEMBL | tr|M0U1P4|M0U1P4_MUSAM | 4.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19370_001} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02298 | 17457 | 21567 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.408 |
| SRR1783600 | control | 16.846 |
| SRR1783602 | moderate drought stress | 38.201 |
| SRR1811619 | moderate drought stress | 38.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.771 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.559 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.525 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.276 |
| SRR2868004 | Drought Stress (root) | 11.387 |
| SRR2967015 | Control (root) | 13.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.053 |
| SRR9715740 | Leaf | 8.163 |
| SRR9715741 | Leaf | 9.521 |
| SRR9715739 | Root | 0.376 |
| SRR9715742 | Root | 2.973 |
| SRR9715743 | Root | 3.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.935 |
| SRR8749028 | MeJA induced 9h | 15.548 |
| SRR8749029 | MeJA induced 9h | 8.447 |
| SRR8749030 | Uninduced | 5.842 |
| SRR8749031 | Uninduced | 5.457 |
| SRR8749032 | Uninduced | 4.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.857 |
| SRR8400027 | Control - Root | 15.700 |