Gene detail

Gene detail information of Glyur002298s00031155

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G22800.1	Alanyl-tRNA synthetase, class IIc
NR	XP_007137313.1	hypothetical protein PHAVU_009G116900g [Phaseolus vulgaris]
COG	YP_001657574.1	alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
Swissprot	tr\|B9HQZ6\|SYAP_POPTR	Probable alanine--tRNA ligase, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03134}
trEMBL	tr\|V7AUH7\|V7AUH7_PHAVU	Probable alanine--tRNA ligase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03134}

Sequence

Transcript Sequence

>Glyur002298s00031155.1
ATGGAAGGGCTGGCGGTTTCACTTCCCCAACTGAAATTTGCCGTTGCCATTCCCATTCCTATTCCTGTTCCTATTCCTACTCCTACCGTGTTTGTTGGTTACATTACAGGATTTGTCTCTCTCAAACCGAAACAACTACGTCGACGTCGTCGTTTCCCCCGTTGTAAATGTACATCATCGCATTCGCAGCCGCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTGAACAACAACAAGTCACGGTCACAGGGAATCCTCATCCTGTGAGTGGAGATTCCATACGGAACAGGTTTCTGAGTTTTTATGCTTCCCGTGGCCACAAGGTCCTTCCCAGTGCTTCTCTTGTCCCAGATGACCCCACCGTTCTCCTCACCATCGCAGGGATGCTTCAATTCAAACCCATCTTCCTCGGCAAGCTTCCGAGACAAGTGCCCCGTGCTACTACTGCGCAGAGGTGCATACGCACCAATGATGTCCACAACGTTGGCCAAACGGCTCGACACCAGACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAGGCAATCCAATGGGCATGGGAGCTCTCCACCATCGAGTTTGGTTTGCCGGCAGACAGACTATGGGTTAGTGTTTATGAAGATGATGATGAGGCTTTTCGGCTATGGACTGATGAGGTTGGTGTCCCGGTTGAGCGCATAAAGAGGTTGGGTGAAGAGGACAACTTTTGGACCAGTGGAGTCACCGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATACGTAGATGCCGATCTCGGTGATGATACACGGTTCATAGAGTTCTACAATCTAGTATTCATGCAATACAACAAAAATGGTGATGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGGCTTGGACTGGAGCGTATGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCATCTAAGTTAGCAAATGTTTCATATGGCATTTCTGATGATCGGACAAAGAGGTATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTTATCTCTGATGGGGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGACGGCTTATCAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTAGGGGAGACCTTGAAGGAGCATTTTTACCTATTATAGCTGAGAAAGTAGTGGAATTAAGTACACATATTGATGCTGATGTGAAGAACAGAGCACCCCGAATCCTTGANGAGTTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAGAAGTTGCTTNAGGAGAAGCTTGCTGATGCTTTATCAAGTGCGGAGAGAAATGGAACTGTACCTTGCTTGGCTGGNGAAGATGTGTTTCTTTTGTATGATACTTTTGGTTTCCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGCGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGTGTCAATCTCAAGCTGCACACAATACTGTCAAACTTGCCATGGGTAATGGGGCAAGTATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGACAGTCTTTATTGTAAAGCAATCGTAGAAAGCCTAGTGGTAAATGGTGATCCAGCCGTACAGGTTAGTGAAGGGAGTAATGTGGAAGTTTTGCTGAACAAGACTCCGTTTTACGCTGAGTCAGGGGGACAAATTGGAGATCATGGTTTTCTATATATTTCTGAGGGTGAGAATCAACCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAGTCTTTAGGTAATATATTTGTTCACAAGGGTACAGTTCGAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAACAGTGGATGTAAAGCTTAGGCAACGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAATCTGCACTTAAAAAAGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTTCTTGACAGTGAGCTTGCAGAAATTGAAGTGCTGATCAACAGATGGATTGAGGATGCGGTACTTCTTCAAACCAAAGTGATGCCACTTGCTGATGCAAAAAGAGCAGGAGCTATTGCAATGTTTGGAGAAAAATATGGTGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGTTGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAATAATCTCAGAGCAGGGTATTGCATCTGGAATCAGGCGAATAGAAGCTGTAGCTGGGGAAGCCTTCATTGAATATGTCAATGCCCGAGATTTTTATCTGAAGCAGCTGTGTTCCGCTCTCAAAGTTAAACCTGAAGAAGTAACAACAAGGATAGAAAACCTTTTAGAGGAGTTACGTGTAGCAAGAAACGAAATTTCCGCTGTGCGTGCAAAAGCTGCAGTCTACAAAGCTTCAGTCATTGCAAGCAAAGCGCTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTAGTCGAGTGCTTGGATGATGTTGATGCCGAGTCACTTAAAAGTGCNGCAGAATATTTAATGGAAACACTAACAGATCCAGCAGCTGTTGTACTGGGCTCATGCCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAATTCATCGGACAGATAGCAAAATTATGTGGTGGCGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCTAGTGCCCTGGAGAAGGCTAAGTCAGAGCTTATAGCTACTCTGTGTGAAAAAGGGAACTNAATTCACAGACACTTGGCAAATGTTTTTATGCTAAAGCAACAGAAAATGTTGATTCTTTCTTTTTGGAGACTACAGCACAAGTAAGAGGGNCGGAAGCTTGGGTAAAGATTTTTCTTTTAATTCCAGAAAGCATATAATGGAAGTTTCANAATAGTGCAGAGCCTGTAATTGCTGGTTGTCAAGTATATATGATTTTATTCTCCTGACACAAGCAGGCCTGCGTTCGCCCCACTTGATTCCAACTTGTAATTTTTGACATGCGCATCGCAGATTGGATGCAGAACTTTGTAATTGNACTATACACGAAAGCTAGTTTATATAGTTACGTAAATATATCTTGTTGGTAATGAATAGAGAAGGCTTTGTGACCTTTAGCTTGAGTTGATGAAAGTATTACCTATA

Protein Sequence

>Glyur002298s00031155.1
MEGLAVSLPQLKFAVAIPIPIPVPIPTPTVFVGYITGFVSLKPKQLRRRRRFPRCKCTSSHSQPQPQPQPQPQPEQQQVTVTGNPHPVSGDSIRNRFLSFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKLPRQVPRATTAQRCIRTNDVHNVGQTARHQTFFEMLGNFSFGDYFKKQAIQWAWELSTIEFGLPADRLWVSVYEDDDEAFRLWTDEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLGDDTRFIEFYNLVFMQYNKNGDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGISDDRTKRYLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTHIDADVKNRAPRILXELKREELRFVQTLERGEKLLXEKLADALSSAERNGTVPCLAGEDVFLLYDTFGFPMEITKEVAEERGVSIDMDGFDIEMEKQRCQSQAAHNTVKLAMGNGASIADNVPDTEFIGYDSLYCKAIVESLVVNGDPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSLGNIFVHKGTVRKGVVEVGKEVEATVDVKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVLINRWIEDAVLLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSLELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYVNARDFYLKQLCSALKVKPEEVTTRIENLLEELRVARNEISAVRAKAAVYKASVIASKALLVGNSKQYRVLVECLDDVDAESLKSAAEYLMETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALEKAKSELIATLCEKGNXIHRHLANVFMLKQQKMLILSFWRLQHK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02298	4518	10891	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01872	AARS, alaS	EC:6.1.1.7	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006419 alanyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component

GO:0005737 cytoplasm

GO:0009507 chloroplast

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004813 alanine-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002298s00031155.1	PF01411.14	tRNA-synt_2c	93	655	1.60E-188
Glyur002298s00031155.1	PF07973.9	tRNA_SAD	754	797	7.20E-18
Glyur002298s00031155.1	PF02272.14	DHHA1	906	975	8.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.948
SRR1783600	control	1.987
SRR1783602	moderate drought stress	2.482
SRR1811619	moderate drought stress	2.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.734
DRR006520	Root Summer glycyrrhizin high producing strain	2.743
DRR006521	Root Winter glycyrrhizin high producing strain	3.136
DRR006522	Root Winter glycyrrhizin high producing strain	3.101
DRR006523	Root Summer glycyrrhizin low producing strain	3.076
DRR006524	Root Summer glycyrrhizin low producing strain	3.040
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.675

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.886
SRR2868004	Drought Stress (root)	6.891
SRR2967015	Control (root)	7.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.123
SRR9715740	Leaf	68.802
SRR9715741	Leaf	42.263
SRR9715739	Root	0.396
SRR9715742	Root	3.176
SRR9715743	Root	2.620

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.230
SRR8749028	MeJA induced 9h	9.652
SRR8749029	MeJA induced 9h	5.434
SRR8749030	Uninduced	3.457
SRR8749031	Uninduced	4.355
SRR8749032	Uninduced	3.533

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.942
SRR8400027	Control - Root	7.183