Gene detail information of Glyur002296s00038271.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20040.1 | 4.00E-156 | isopentenyltransferase 9 |
| NR | XP_004489048.1 | 0 | PREDICTED: tRNA dimethylallyltransferase 9-like [Cicer arietinum] |
| COG | YP_004672082.1 | 3.00E-63 | tRNA dimethylallyltransferase [Simkania negevensis Z] |
| Swissprot | tr|Q9C5J6|IPT9_ARATH | 0 | tRNA dimethylallyltransferase 9 |
| trEMBL | tr|A0A072V993|A0A072V993_MEDTR | 0 | tRNA dimethylallyltransferase {ECO:0000313|EMBL:KEH38634.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02296 | 791 | 6916 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00791 | miaA, TRIT1 | EC:2.5.1.75 | Zeatin biosynthesis | map00908 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002296s00038271.1 | PF01715.12 | IPPT | 79 | 377 | 4.00E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.050 |
| SRR1783600 | control | 5.185 |
| SRR1783602 | moderate drought stress | 4.174 |
| SRR1811619 | moderate drought stress | 4.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.389 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.731 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.868 |
| SRR2868004 | Drought Stress (root) | 3.411 |
| SRR2967015 | Control (root) | 3.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.922 |
| SRR9715740 | Leaf | 1.525 |
| SRR9715741 | Leaf | 1.161 |
| SRR9715739 | Root | 0.995 |
| SRR9715742 | Root | 1.760 |
| SRR9715743 | Root | 1.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.892 |
| SRR8749028 | MeJA induced 9h | 7.900 |
| SRR8749029 | MeJA induced 9h | 8.438 |
| SRR8749030 | Uninduced | 3.517 |
| SRR8749031 | Uninduced | 1.460 |
| SRR8749032 | Uninduced | 4.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.279 |
| SRR8400027 | Control - Root | 4.950 |