Gene detail information of Glyur002291s00037462 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 3.00E-04 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003605305.1 | 1.53E-53 | Replication factor A protein [Medicago truncatula] |
| trEMBL | tr|G7IGJ6|G7IGJ6_MEDTR | 1.00E-46 | Replication factor-A carboxy-terminal domain protein {ECO:0000313|EMBL:AES65761.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02291 | 37798 | 43942 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002291s00037462.1 | PF02721.9 | DUF223 | 2 | 94 | 2.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.453 |
| SRR1783600 | control | 7.072 |
| SRR1783602 | moderate drought stress | 5.975 |
| SRR1811619 | moderate drought stress | 6.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.914 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.890 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.371 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.454 |
| SRR2868004 | Drought Stress (root) | 0.194 |
| SRR2967015 | Control (root) | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.868 |
| SRR9715740 | Leaf | 0.111 |
| SRR9715741 | Leaf | 2.898 |
| SRR9715739 | Root | 0.802 |
| SRR9715742 | Root | 2.428 |
| SRR9715743 | Root | 3.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.037 |
| SRR8749029 | MeJA induced 9h | 0.053 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.929 |
| SRR8400027 | Control - Root | 8.048 |