Gene detail

Gene detail information of Glyur002288s00033078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65780.1	5.00E-162	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_003616121.1	0	DNA-binding protein SMUBP-2 [Medicago truncatula]
COG	YP_004252663.1	2.00E-35	helicase [Odoribacter splanchnicus DSM 220712]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	9.00E-49	Probable helicase MAGATAMA 3
trEMBL	tr\|G7KFN9\|G7KFN9_MEDTR	0	P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313\|EMBL:AES99076.2}

Sequence

Transcript Sequence

>Glyur002288s00033078.1
CAGCACAAACCCATATCATTAAGGCTCCTTATTGATCCCTTTTTATTATCAACAACTCTAAATCAATCAGTAGCACAAACCCATATCATTAAGGCTCCTCTTTGTTTCGTACACACAACAAGGCCTACACAAGGACAGATTATCAAAGGCCTAAAACAGTTTTCGTACAAAACTTTTTCAAAAGCTAAAGCACATTTACAGATTGCAGCATCCATGAACTTCGACCCTCCCGAGGACTTGTTCTATCAGGTTACACTGAAGAGAAGTACTAGTGAGGTGAATGATGTAGGAAAATATGAACCTGAGGTTGGAGATCTCTTTGCATTAACATATATTAAACCAAGAAGCATAGATGACTTGATCAGGACCAAAAGATACTTCCAAATTGCTTATATTCGCGGGTCGAAAGATGAATATACTGATGAGATTCCTATACTGTTGTCCCAGTACATGGAGTTGGATGATATTGATAACGAATCTGACATGAGGAGAAACAAAGCACAGAAGCTTTATGCCGTTTATCTTACTAACATAACAACAAATATTCGTATTTGGAATGCCTTGAAAAGATCACAGTTGGAGGGATCTAACATGAACATTCTTAAAAAGGTGTTGCAACCTGATACAAGGAGTGGAGGAAACTGCCACACTTGCTTGTCTGGAGAAACTCACAGTCAATCCTATTTTCAAGTACAGAACATAATCAGATCTCATAATCTGAATGAACCACAAATAAATGCAGTTTTAAGTTGTTTTACCATGAAGAATTGTCGTCACAATGACCCTGTGAAACTTATATGGGGTCCACCTGGGACTGGCAAAACAAAGACAGTTGCTTCCTTGTTATTTTGCCTACTCAAGTTGAGAATAAGAACACTGACATGTGCTCCTACTAACACTGCAGTGGTGACCNTGGCGGCTCGCCTTCACAGTATAGCCAAGGATTCACTTGAGCATGACACATATGGGCTTGGTGACATAGTGCTACTTGGAAATAGCAAGAGAATGAAAATAGATTGTCATAAGGGTCTTGGGGAAGTGTTTCTGGATCATAGAGTGGATGATTTGTATCGCTGTCTTGTTCCAATGAGTGGATGGAAACATTATTTGGAATCAATGATCAAGTTACTAAAGGACCCCGAAGACCAATATGCTTCATATAAGCATGATATGAATGATGATGACAAGGNTGTTATGTCATTAGAAGATTTTGCTAAGGAACGTTGCAGTAAAGTGGAGCCTGCATATATTTCATACCAGAAACGTTGTAAGAGTCATGACCCCATGACATTAGAGCAGTTTGTGAAGAAGAAATATGATTATATTGTAGAGCAACATGAGATGTATAAACGTGATAAGAAGTTAGGTGCTGGCATAACAATGGAGCAATTTCTGAGACAGAGATTCTGTTTGTTTGGAGGGAAGCTCAAGGTATACCTGAGAACCTTGTGGACACACTTACCAACATGTGTCATTCCATTTGAGGTGGTGAAGGAAATGTTTAGAGCTCTTGATTTGTTAAAATCTCTTGAAACTTCCATGTTTCAAACCAAAGCCAAACAAGTTCCCGAAGATTGTGAAGATGGAGAAAGCATTTTTGATTGCTTTGGATGGTTAAGCTTTGAAAGAGAAAAGTTCCTTCACACCTTAAGTTCACTTTCTGAGTCGATTAAGCTTCCAAACATTACAAGCAAGTATAGCATATTGCANTTTTGCTTGACGANCGCGTGCCTAGTGTTTTGTACAGCATCAGGTTCTTCTAAATTGTACACAGAAGGAATGAAACAAATGCAGTTTTTAGTAATTGATGAAGCGGCTCAGCTGAAAGAATGTGAATCAGCTATTCCNTTACAGCTACCAGNCCTCAACCGTTGTATCCTCATAGGTGATGATAGGCAACTTCCTGCAATGGTCAAAAGCAAGATTGCTGAGAGGGCTGATTTTGGAAGAAGCTTATTCAAGAGGCTGGTATTGTTGGGATACAAGAGGCACATGCTTAATGTTCAATATAGAATGCATCCATCCATTAGCATGTTCCCAAGTAAAGAGTTCTATGATGGGCAACTTTTTGATGCCCCCATTGTCAAAGAAAGAAGCTATAACAAGCGTTACCTTAAAGGAAAAATGTTTGGTTCCTACTCTTTTATTAACATATCCAAGGGTCAAGAGCAGTCTAATCATGACCANAGTTTGAAGAACATAGTTGAGGCTGCTGCTATCTCTCAGATTATTGGAAGCCTTAAAAAGGAGGTTGGAAGGACAAGGAGGAAAGTTAGCATAGGAATCATATCTCCATATAAANCCCAAGTTTATGAAATCCACGAGAAAGTTAAGCAGTACATTTTGGTTTCTGATCCTTACTTCTCTATCAGTGTTCGTTCTATTGATGGCTTTCAAGGTGGTGAAGAAGATATTATAATAATTTCCACTGTTAGATCCAATGAGAGTGGAAAAGTGGGGTTTCTTTCCNATAGACAAAGAGCAAATGTGTCTATCACTAGAGCTAGATATTGCCTTTGGATATTAGGAAATGCAACCACTTTGATCAACAGTAACTCTGCGTGGAGTAAGCTAGTTCTTGATGCTAAGGAAAGAAACTGTTTCCATGATGCTGATGAGGATAAGAAATTGGCTCAAGCTATTGAGGATGCCTTGTTTGAGTTTGAACTACTCTATGAACCTGTATCCCCATTCAAGAAACTAAGCCTAAGGGACAAGTCAGACTCAGCTGCTACTTCTTCTAGCAAACCACGGAAACTAGGCGACGAAGAACAAGGATGATGAATGACTGCAGACATTGAAGCACGGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02288	39638	43644	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002288s00033078.1	PF13086.1	AAA_11	239	641	5.30E-35
Glyur002288s00033078.1	PF13087.1	AAA_12	649	845	2.20E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.069
SRR1783600	control	2.876
SRR1783602	moderate drought stress	2.396
SRR1811619	moderate drought stress	2.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.683
DRR006520	Root Summer glycyrrhizin high producing strain	7.748
DRR006521	Root Winter glycyrrhizin high producing strain	0.950
DRR006522	Root Winter glycyrrhizin high producing strain	1.197
DRR006523	Root Summer glycyrrhizin low producing strain	6.469
DRR006524	Root Summer glycyrrhizin low producing strain	5.885
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.180
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.002
SRR2868004	Drought Stress (root)	1.107
SRR2967015	Control (root)	1.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.991
SRR9715740	Leaf	1.735
SRR9715741	Leaf	2.010
SRR9715739	Root	0.122
SRR9715742	Root	4.375
SRR9715743	Root	3.055

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.139
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.086
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.965
SRR8400027	Control - Root	1.121