Gene detail

Gene detail information of Glyur002288s00033072

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G37020.2	1.00E-140	auxin response factor 8
NR	XP_006575467.1	0	PREDICTED: auxin response factor 8-like isoform X2 [Glycine max]
Swissprot	tr\|Q9FGV1\|ARFH_ARATH	1.00E-170	Auxin response factor 8
trEMBL	tr\|K7KAF4\|K7KAF4_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur002288s00033072.1
CACACACTCACACACACTGTGCGTTTTCATTCATTCAAACCCAAAAATCCTCTCACTTGGGTCTCAATCCGAAAGGGATAGGCCACAAAAGAAGGGACTTTACTTAAACACTCACACTTGTTGTGGCTGCTTCATTTCATTCTTTCTTTCTCCTATTGATAATTCTTAGCTTTCCTTCCTTCTTCCGTTCCTTTCATGGCGATCTCGAACAACGTGCCACCCTTGTTGCTGTTGGTGATGTTTCAGCTTGGCTCTAATTGGGTTCCACTCTATGCTCATCAGGGTCATGGGTTTGCTTGATATTTAGCAAAAAAAAAAAAGGCCCTGCTTGTTCTAATTCTTCTTCTCTTAGCTTCTTCTCTCATTCCACCAACCCCCTTTTGGAGGGCAGGGTCAATTTCCTTTCTTTTTTTTTCACTGGGGTTCTTCTTAATTACTTGTTTCTGTTGGGGTGGTGGGGTTCTGAGTTTTCCTCATCATGTTGTTCTACTTNTTCATGGATCCCATGCTCCTGGTTTTTTTGGGTTGTGTTTGATTTTTATTTTAAGTTGGGTGTTTTTGTTTTGTTTTTGTGGTGTGGGCATGGAGTGCATTGGCAAGTGGGAAGAGGGAGGTATGGGGGAATGCAATGATGGGTTTGAGGAAATTAAGGATAGTGGCAACAAGCTAGGGTTCCATGTGTGTGTGAATTGCTAAATTACTGTGCCTCTTCAAAAGGAGGAATAAAGGGTAAAGCTTTGATATGAAGCTTTCAACATCAGGAATGGGTCAGCAGGGACACGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTTCTGCCACTACTAATAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTACCACCCCAGNTGATTTGTCAACTTCACAACGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTACAGCCGTTGACACCGGTATNGTTTTATTCTTTGACAGCTTGTTTTATTTGTAATAATGGGATGGTTTCTTGTTTCTTGAGTTGGAAAATATGTTTGTAATTGCGCTTGTAGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGNATTCCAAGTAAGCAGCCCTCAAACTATTTTTGCAAGACATTGACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGTAGTGTCCATATTTTCTTTTCCCTTTATGTTTGATTCTGGTTTGAAATATTTCTCTTCTATTTGGGNTGTGTACAGGATTTCTCACAGCAACCACCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACACATTTTCCGGGGACAGCCAAAACGACACCTNCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTCGTNGCTGGAGATTCCGTGCTTTTCATTTGGAATGAAAAAAACCAGCTTCTTTTGGGAATACGTCGTGCCACTCGGCCACAAACTGTTATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCNGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTGTTCTTTAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCGAAATATATCAAAGCAGTGTACCATACACGGGTTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACCGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCCGTTAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAACCACGGGTATCGTTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTACCCATCACTATTTCCTCTCAGATTGAAACGACCATGGCATCCTGGCACCTCTTCCTTTCATGATGGCAGAGNTGAAGCGACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGATCATGGTCTCAATTCCCTGAATTTTCAAGGNGCTGGTTTGTTGCCGTGGACGCAGCAGAGACNGGATCCGGCTTTGCTTGGAAATGATCAAAATCAGCAATACCAAGCAATGTTGGCAGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTATTGAGGCAACAAATGATGAGTTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCTCCATCCTCCTTTGCAGCTTCAGCAACAGCAAGCGATTCAACAATCCGTATCATCTAACATCCTGCAGCCACAACCTCAAGTATTGGCAGAGAACATGTCTCAGCACCTCATTCAGAAGTCACACAACAATCGAGAAGACCAAATGCAGCCGCAGCAGCAGCAACATACTTATCAGGATACACTTCTAATTCAAGGCGATCAACTCCATCAGAGGCAACAACACTCTAGTCTGCCTTCACCNTCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCGCCGCTTCAGTTTCGCCAGGACAAAACATGCTTGGTTCACTTTGCTCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTGGTCATTCTATGCTGAATGAACAGTTACCCCAACAATNGTGGGCCCCAAAGTATACAACACCTTTGCAGGTCAATGCCTTTGGCAACTCANTGTCACCTCATGTGCAATATTCTGGAAAAGATACTGCAATGGTGCCGCCGCATTGTAACTCCGACACCCAAAATTCCACTTTGTTTGGGGTCAATATCGACTCATCTGGCCTTCTGCTTCCCACCACTGTCCCTCGGTATACTAATGCATCAGCCGATACTGATGCATCGACAATGCCGTTAGGGGAGTCTGGATTTCAGGGATCTCTATATCCTTGCATGCAAGATTCATCCGAGTTGTTGCAAAGTGCCGGGCAAGTTGACGCCGAGAACCAGGCGCCAACATTTGTNAAGAAAATGGGGGAACAAGCCATAGAATCCCTGGGTCCAAGTTCTGGACAAAGGCTGAATAACAACACTGGTGCAGAGTCTCATGACATTGCCTCTGGATTAGGTTCACTTGAATACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02288	7615	16455	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002288s00033072.1	PF06507.8	Auxin_resp	19	102	3.40E-35
Glyur002288s00033072.2	PF06507.8	Auxin_resp	156	183	7.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.069
SRR1783600	control	24.236
SRR1783602	moderate drought stress	30.244
SRR1811619	moderate drought stress	29.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.440
DRR006520	Root Summer glycyrrhizin high producing strain	29.932
DRR006521	Root Winter glycyrrhizin high producing strain	43.055
DRR006522	Root Winter glycyrrhizin high producing strain	41.803
DRR006523	Root Summer glycyrrhizin low producing strain	23.971
DRR006524	Root Summer glycyrrhizin low producing strain	23.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.368
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.441

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.240
SRR2868004	Drought Stress (root)	11.860
SRR2967015	Control (root)	16.518

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.245
SRR9715740	Leaf	6.877
SRR9715741	Leaf	9.954
SRR9715739	Root	7.841
SRR9715742	Root	25.016
SRR9715743	Root	19.830

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.602
SRR8749028	MeJA induced 9h	6.095
SRR8749029	MeJA induced 9h	6.059
SRR8749030	Uninduced	3.097
SRR8749031	Uninduced	2.172
SRR8749032	Uninduced	2.398

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.674
SRR8400027	Control - Root	21.237