Gene detail information of Glyur002288s00033071 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16370.1 | 0 | acyl activating enzyme 5 |
| NR | XP_003519307.1 | 0 | PREDICTED: probable acyl-activating enzyme 5, peroxisomal-like [Glycine max] |
| COG | YP_165932.1 | 0 | AMP-binding protein [Ruegeria pomeroyi DSS-3] |
| Swissprot | tr|Q9FFE6|AAE5_ARATH | 0 | Probable acyl-activating enzyme 5, peroxisomal |
| trEMBL | tr|I1JHQ7|I1JHQ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02288 | 3659 | 5398 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002288s00033071.1 | PF00501.23 | AMP-binding | 21 | 450 | 8.50E-82 |
| Glyur002288s00033071.1 | PF13193.1 | AMP-binding_C | 460 | 537 | 5.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.521 |
| SRR1783600 | control | 1.945 |
| SRR1783602 | moderate drought stress | 4.673 |
| SRR1811619 | moderate drought stress | 4.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.269 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.494 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.434 |
| SRR2868004 | Drought Stress (root) | 37.406 |
| SRR2967015 | Control (root) | 34.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.839 |
| SRR9715740 | Leaf | 13.246 |
| SRR9715741 | Leaf | 14.562 |
| SRR9715739 | Root | 10.859 |
| SRR9715742 | Root | 11.681 |
| SRR9715743 | Root | 11.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.928 |
| SRR8749028 | MeJA induced 9h | 49.685 |
| SRR8749029 | MeJA induced 9h | 92.470 |
| SRR8749030 | Uninduced | 68.268 |
| SRR8749031 | Uninduced | 154.466 |
| SRR8749032 | Uninduced | 115.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.970 |
| SRR8400027 | Control - Root | 3.663 |