Gene detail information of Glyur002283s00035199.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14220.21.00E-90Flavin containing amine oxidoreductase family
NRXP_004515432.16.42E-133PREDICTED: protoporphyrinogen oxidase, chloroplastic/mitochondrial-like [Cicer arietinum]
COGYP_003290940.12.00E-38protoporphyrinogen oxidase [Rhodothermus marinus DSM 4252]
Swissprottr|Q8S9J1|PPOCM_ARATH1.00E-109Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial (Precursor)
trEMBLtr|G7L3C0|G7L3C0_MEDTR4.00E-130Protoporphyrinogen oxidase {ECO:0000313|EMBL:AES78420.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold022834744233+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K00231PPOX, hemYEC:1.3.3.4 1.3.3.15Porphyrin and chlorophyll metabolismmap00860


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002283s00035199.1PF01593.19Amino_oxidase682271.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.139
SRR1783600control10.557
SRR1783602moderate drought stress12.380
SRR1811619moderate drought stress14.490

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.512
DRR006520Root Summer glycyrrhizin high producing strain19.675
DRR006521Root Winter glycyrrhizin high producing strain28.281
DRR006522Root Winter glycyrrhizin high producing strain26.003
DRR006523Root Summer glycyrrhizin low producing strain20.275
DRR006524Root Summer glycyrrhizin low producing strain19.886
DRR006525Leaf Summer glycyrrhizin high producing strain11.019
DRR006526Leaf Summer glycyrrhizin high producing strain11.669

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)19.776
SRR2868004Drought Stress (root)19.349
SRR2967015Control (root)18.919

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf8.721
SRR9715740Leaf11.972
SRR9715741Leaf11.133
SRR9715739Root3.680
SRR9715742Root9.249
SRR9715743Root7.435

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.218
SRR8749028MeJA induced 9h31.680
SRR8749029MeJA induced 9h43.995
SRR8749030Uninduced53.868
SRR8749031Uninduced54.973
SRR8749032Uninduced48.406

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root18.537
SRR8400027Control - Root20.333

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved