Gene detail information of Glyur002279s00040607 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003602037.1 | 5.86E-10 | RING finger protein [Medicago truncatula] |
| trEMBL | tr|G7J4X5|G7J4X5_MEDTR | 2.00E-10 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES72288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02279 | 37786 | 39266 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.364 |
| SRR1783600 | control | 0.236 |
| SRR1783602 | moderate drought stress | 0.304 |
| SRR1811619 | moderate drought stress | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.328 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.923 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.952 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.988 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.948 |
| SRR2868004 | Drought Stress (root) | 5.597 |
| SRR2967015 | Control (root) | 4.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.230 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.750 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.508 |
| SRR9715743 | Root | 0.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.629 |
| SRR8400027 | Control - Root | 0.961 |