Gene detail information of Glyur002278s00037869 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21190.1 | 1.00E-85 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004516703.1 | 5.48E-180 | PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8LG95|PP332_ARATH | 1.00E-118 | Pentatricopeptide repeat-containing protein At4g21190 |
| trEMBL | tr|I1MPG5|I1MPG5_SOYBN | 2.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G29590.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02278 | 19093 | 23852 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002278s00037869.1 | PF13812.1 | PPR_3 | 160 | 192 | 0.00014 |
| Glyur002278s00037869.2 | PF13812.1 | PPR_3 | 160 | 192 | 0.00014 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.614 |
| SRR1783600 | control | 2.604 |
| SRR1783602 | moderate drought stress | 4.544 |
| SRR1811619 | moderate drought stress | 4.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.646 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.550 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.708 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.539 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.718 |
| SRR2868004 | Drought Stress (root) | 3.579 |
| SRR2967015 | Control (root) | 4.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.612 |
| SRR9715740 | Leaf | 15.247 |
| SRR9715741 | Leaf | 10.109 |
| SRR9715739 | Root | 0.283 |
| SRR9715742 | Root | 2.232 |
| SRR9715743 | Root | 1.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.753 |
| SRR8749028 | MeJA induced 9h | 1.729 |
| SRR8749029 | MeJA induced 9h | 1.455 |
| SRR8749030 | Uninduced | 1.282 |
| SRR8749031 | Uninduced | 1.307 |
| SRR8749032 | Uninduced | 1.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.028 |
| SRR8400027 | Control - Root | 4.978 |