Gene detail information of Glyur002275s00030378 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25740.1 | 2.00E-100 | ATP-dependent protease La (LON) domain protein |
| NR | XP_003588429.1 | 0 | Protein cereblon [Medicago truncatula] |
| trEMBL | tr|G7I262|G7I262_MEDTR | 0 | ATP-dependent protease LA (Lon) domain protein {ECO:0000313|EMBL:AES58680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02275 | 30133 | 35248 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002275s00030378.1 | PF02190.11 | LON | 94 | 140 | 1.10E-06 |
| Glyur002275s00030378.1 | PF02190.11 | LON | 298 | 382 | 5.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.934 |
| SRR1783600 | control | 8.619 |
| SRR1783602 | moderate drought stress | 9.023 |
| SRR1811619 | moderate drought stress | 7.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.601 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.593 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.899 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.665 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.452 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.295 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.867 |
| SRR2868004 | Drought Stress (root) | 5.102 |
| SRR2967015 | Control (root) | 7.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.069 |
| SRR9715740 | Leaf | 9.860 |
| SRR9715741 | Leaf | 10.695 |
| SRR9715739 | Root | 1.722 |
| SRR9715742 | Root | 6.233 |
| SRR9715743 | Root | 5.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.962 |
| SRR8749028 | MeJA induced 9h | 4.982 |
| SRR8749029 | MeJA induced 9h | 3.831 |
| SRR8749030 | Uninduced | 3.484 |
| SRR8749031 | Uninduced | 2.406 |
| SRR8749032 | Uninduced | 2.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.676 |
| SRR8400027 | Control - Root | 9.934 |