Gene detail

Gene detail information of Glyur002275s00030373

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60080.1	5.00E-110	3'-5'-exoribonuclease family protein
NR	XP_003531860.1	0	PREDICTED: exosome complex component RRP43-like [Glycine max]
COG	NP_613665.1	2.00E-38	exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9M209\|CER7_ARATH	2.00E-20	Protein ECERIFERUM 7
trEMBL	tr\|I1KWF8\|I1KWF8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G27080.1}

Sequence

Transcript Sequence

>Glyur002275s00030373.1
CGAAACCCGAAGCTCTCTCACTCTCTGCTGCGTAGCTGCGCCGGAGAGCTCCCACGAGTTCGCCTCTCACCACCGTCGCTGCCAATTGTTCCAAAAGCCGTAACCTGAAAAGCCCTCTCCTCACTGAAAAAGAAGAGAAATGGGGTTTCCAAATGCATCCGAAGACTTGTCATCGGAAATGGAGGTTGACGCGTTTCGACGCCTTTTCCCGCTTCGATATTTCGAGCGTCATCTTGCTGAATCCATACGCCCTGATGGTAGACCATTTTCTAAAGCAAGAGACACTAGTATATTCCTTGGTGCTGTTGCATCTGCTAATGGGTCAGCTCTTGTGAAGATTGGATCCACCACTATGTTGACTGCTATTAAAATGGAAGTTATGACTCCCTCCTTGGAGTCACCAGATGAGGGCTCTTTAGCTATTGATTTCCACATGCCTCCCATCTGTTCTCCCATTGTTAGGCCTGGCAGGCCTGCTGAGGCTTCACCGGTTGTGTCAAAACAGTTTTCTGGAATGATTGATCTGAAAGAATTGTCCTTGGTCAGTGGAAAAGCTGCATGGATGGCTTACTTGGATGTCTATTGTTTGGATGCTGATGGGGCTCTTTTTGATGCTGCTTTACTTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAGAATAGTACTGATGTCTGATGAAGATGGACAAAAGCAGGCAAAGGAGCTAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAACATTCCATTCTCATTAACATGCATCCTTCACAAAAGTTGCATCTTGGCAGATCCTACNGCAGAAGAAGAATCCATCATGGAAACCCATGTGACGATTGTTTTGGATACATCTGGTCAATTAATATCTCTTTACAAGCCTGGTGGGCCAGTTCTTGCGTATACTTCTGCTATCCAGGACTGTGTCGCGTTGACCAGGCAAAGAGTAAAGGAACTGAAGAGCTTCTTAGACAAAGAAAATTCTGCTATGGAGGTTGAATAGAATTATAAATTAATCTTAATTGTCTTGAATGGTTATTTGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02275	4685	8564	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002275s00030373.1	PF01138.16	RNase_PH	47	174	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.569
SRR1783600	control	9.577
SRR1783602	moderate drought stress	7.743
SRR1811619	moderate drought stress	7.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.750
DRR006520	Root Summer glycyrrhizin high producing strain	7.918
DRR006521	Root Winter glycyrrhizin high producing strain	5.365
DRR006522	Root Winter glycyrrhizin high producing strain	5.422
DRR006523	Root Summer glycyrrhizin low producing strain	12.976
DRR006524	Root Summer glycyrrhizin low producing strain	11.845
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.181
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.199
SRR2868004	Drought Stress (root)	8.950
SRR2967015	Control (root)	8.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.545
SRR9715740	Leaf	7.357
SRR9715741	Leaf	3.524
SRR9715739	Root	9.823
SRR9715742	Root	5.169
SRR9715743	Root	6.232

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.782
SRR8749028	MeJA induced 9h	9.408
SRR8749029	MeJA induced 9h	14.846
SRR8749030	Uninduced	2.718
SRR8749031	Uninduced	1.335
SRR8749032	Uninduced	2.812

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.782
SRR8400027	Control - Root	16.395