Gene detail

Gene detail information of Glyur002269s00032426.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61540.1	6.00E-142	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NR	XP_004499624.1	0	PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3-like [Cicer arietinum]
COG	YP_003126168.1	4.00E-50	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q56W64\|ASPG3_ARATH	0	Isoaspartyl peptidase/L-asparaginase 3 subunit beta (Precursor)
trEMBL	tr\|G7IVL2\|G7IVL2_MEDTR	0	Isoaspartyl peptidase/L-asparaginase {ECO:0000313\|EMBL:AES68431.1}

Sequence

Transcript Sequence

>Glyur002269s00032426.1
CTGGATTTTAGATTGCNCAATTGGGAGGGCTTCAAGAAGACAAGAACACTCTCTCCATGGCTGCAAAGGCCTTCAACTGTATCCTATTCCTTCCTTTACTCTCTCTGGTGATGGGGCATGGAAGTGTGGAAGTGGAGGAGCAGTACTACCCATTGGTTGTGAGCACGTGGCCGTTTGTTGAGGCTGTTAGAGCTGCATGGAGGGCTGTTGATGGTGGCTCTTCTGCTGTGGATTCCGTCGTTGAAGGTTGCTCCGCTTGTGAGGAACTCAGGTGTGATGGAACAGTTGGTCCAGGTGGGAGTCCAGATGAGAATGGAGAAACTACAATTGATGCTCTGGTCATGGATGGGGTAACTACCACATACCATGTGACTATGGAAGTAGGAGCTGTTGCTGCCATGAGATATGTAAAGGATGGAATCAAGGCTGCTAGGTTAGTGATGCAACATACCGAACACACTTTGCTGGTCGGAGAGAAAGCATCAGAATTTGCAATTTCAATGGGTCTTCCAGGACCCACAAACCTGAGTTCATCAGAATCTGTGGAGAAGTGGACGAAATGGAAACATAATAGCTGCCAACCAAATTTCAGGAAAAACGTATTACCTACAAATAGTTGTGGTCCTTATCGTCCAACTAACTATCTGGAGCTTCCTGATGAAACATGCTCCGATACTGATCAGATGTCAAGATTACTTCATGTTGGTCTTCACAGCCATGATACTATATCAATGGCTGTCATTGATAGAATGGGACACATTGCTGTTGGCACATCAACTAATGGGGCAACATTCAAGATTCCTGGCAGGGTAGGTGATGGTCCCATAGCTGGATCCTCAGCATACGCTGTTGATGAAGTTGGAGCTTGTTGTGCAACTGGGGATGGTGACGTCATGATGCGCTTCCTTCCATGCTATCAAGTTGTGGAAAGCATGAGGTTGGGNATGGAACCCAAACTTGCTGCTAAGGATGCAATAGCACGAATAACAAGAAAATTTCCGGACTTTGTGGGAGCTGTCGTTGCCCTTAACAAAACGGGGGAACATGCCGGTGCCTGCCATGGTTGGACATTTAAATATTCAGTAAGGAGCCCTGCAATGAAAGATGTACAAGTCTTTACTGTTCTACCCTGAAAGAGGAGTCTGTTGAAGAAATTAGTATCATTCAACATTTAAATTCAGCTCAGTATGCTAATTGTGTTGGTTGAGGAAATTTGATGACACACAAATGTGACTATAATGTAATGTAATGTTATCCTCATTTGTGATATTAACTGAGCATTTGAAGAGGTCCGAACCGACTGATGTTGAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02269	40357	44637	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01444	AGA, aspG	EC:3.5.1.26	Other glycan degradation	map00511
			Lysosome	map04142

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002269s00032426.1	PF01112.13	Asparaginase_2	20	336	9.80E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.789
SRR1783600	control	4.632
SRR1783602	moderate drought stress	5.345
SRR1811619	moderate drought stress	5.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.913
DRR006520	Root Summer glycyrrhizin high producing strain	6.753
DRR006521	Root Winter glycyrrhizin high producing strain	5.136
DRR006522	Root Winter glycyrrhizin high producing strain	5.269
DRR006523	Root Summer glycyrrhizin low producing strain	7.794
DRR006524	Root Summer glycyrrhizin low producing strain	8.162
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.452
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.651

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.457
SRR2868004	Drought Stress (root)	18.018
SRR2967015	Control (root)	17.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.273
SRR9715740	Leaf	14.851
SRR9715741	Leaf	15.722
SRR9715739	Root	7.697
SRR9715742	Root	6.866
SRR9715743	Root	7.122

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.126
SRR8749028	MeJA induced 9h	7.070
SRR8749029	MeJA induced 9h	6.353
SRR8749030	Uninduced	3.255
SRR8749031	Uninduced	2.225
SRR8749032	Uninduced	2.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.794
SRR8400027	Control - Root	19.202