Gene detail

Gene detail information of Glyur002269s00032424

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40770.1	6.00E-111	prohibitin 3
NR	XP_003527554.1	0	PREDICTED: prohibitin-4, mitochondrial-like [Glycine max]
COG	YP_002770974.1	3.00E-32	hypothetical protein BBR47_14930 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|O04331\|PHB3_ARATH	3.00E-170	Prohibitin-3, mitochondrial
trEMBL	tr\|I1KFR0\|I1KFR0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G47520.1}

Sequence

Transcript Sequence

>Glyur002269s00032424.1
TCACTTAACTAAAACCCTCCCTCTCCATTTCCTTGAACCCTAAAACCCTNTCTTTCTTCCCCATCTCTCTCCCAACAAACTCCAAATGGGAAGCAGCCAAGCGGCAGTGTCGTTCCTGACGAACCTTTCACGCGCCGCCATAGGCCTCGGCGGTGCAGCCGCTATCTTGAACTCATCCCTGTACACGGTTGACGGAGGACAACGCGCCGTCCTATTCGACCGTTTCCGTGGAATCCTCGAAGAAACCGTTGGTGAAGGGACCCACTTCTTAATCCCATGGGTTCAGAAGCCATACATCTTCGACATCCGAACCCGGCCCCACACGTTCTCTTCGGTTTCCGGCACGAAGGATCTACAGATGGTGAACCTCACGCTCCGGTTGCTTTCCCGGCCCGATACGGACCGGCTTCCGACCATCGTTCAGAACCTCGGACTTGAGTACGATGAGAAGGTACTCCCTTCTATTGGCAATGAGGTGCTCAAGGCCGTTGTTGCTCAGTTCAATGCCGATCAGCTCCTCACCGACCGCCCCACCGTCTCCGCCCTCGCCCGCGACAGCCTCGTCCGCCGCGCNAAGGACTTCAACATCCTCCTTGATGATGTTGCCATCACTCACTTGTCCTATGGCAACGAGTTCTCAAGGGCTGTTGAGCAGAAGCAGGTAGCGCAGCAGGAGGCGGAGAGGTCTAAGTTTGTTGTGATGAAGGCGGAGCAGGAGCGTCGCGCTGCTATTATCCGTGCTGAGGGAGAGAGTGATGCTGCTAAGCTGATCTCCGATGCTACTGCATCTGCTGGTATGGGGTTGATTGAGCTCAGGAGGATTGAGGCTTCAAGGGAAGTGGCGTCTACACTGGCTAAGTCTCCCAATGTCTCTTACCTCCCTGGTGGAAGGAACTTGCTAATGGCTCTTAGTCCTTCGCGTTGATGCAGGGTTCAATGGTGTTATGACATGCTAGGATCANTTGTCTTGAGGCTTTCCTTTGTTTGAAGTAATTTTTTAGTTTGTAGATCCTATATATCTCATCTGACCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02269	35942	38918	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002269s00032424.1	PF01145.20	Band_7	33	215	9.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.294
SRR1783600	control	32.780
SRR1783602	moderate drought stress	31.745
SRR1811619	moderate drought stress	31.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.311
DRR006520	Root Summer glycyrrhizin high producing strain	39.032
DRR006521	Root Winter glycyrrhizin high producing strain	10.202
DRR006522	Root Winter glycyrrhizin high producing strain	10.067
DRR006523	Root Summer glycyrrhizin low producing strain	29.323
DRR006524	Root Summer glycyrrhizin low producing strain	28.737
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.576

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.012
SRR2868004	Drought Stress (root)	40.089
SRR2967015	Control (root)	35.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.710
SRR9715740	Leaf	40.184
SRR9715741	Leaf	22.309
SRR9715739	Root	92.295
SRR9715742	Root	58.057
SRR9715743	Root	63.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.574
SRR8749028	MeJA induced 9h	40.892
SRR8749029	MeJA induced 9h	51.762
SRR8749030	Uninduced	3.878
SRR8749031	Uninduced	1.880
SRR8749032	Uninduced	7.726

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.056
SRR8400027	Control - Root	62.474