Gene detail information of Glyur002268s00033545 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04520.1 | 4.00E-133 | Protein of unknown function DUF455 |
| NR | XP_004502629.1 | 0 | PREDICTED: uncharacterized protein HI_0077-like isoform X1 [Cicer arietinum] |
| COG | YP_005031764.1 | 2.00E-69 | conserved protein of unknown function [Azospirillum brasilense Sp245] |
| trEMBL | tr|G7J6T5|G7J6T5_MEDTR | 0 | 3-oxoacyl-[acyl-carrier] synthase-like protein {ECO:0000313|EMBL:AES72467.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02268 | 11644 | 20685 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002268s00033545.1 | PF04305.9 | DUF455 | 16 | 181 | 2.20E-51 |
| Glyur002268s00033545.1 | PF04305.9 | DUF455 | 205 | 481 | 2.30E-81 |
| Glyur002268s00033545.2 | PF04305.9 | DUF455 | 16 | 292 | 4.90E-82 |
| Glyur002268s00033545.3 | PF04305.9 | DUF455 | 16 | 292 | 4.90E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.614 |
| SRR1783600 | control | 9.026 |
| SRR1783602 | moderate drought stress | 16.380 |
| SRR1811619 | moderate drought stress | 15.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.913 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.774 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.823 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.004 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.607 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.547 |
| SRR2868004 | Drought Stress (root) | 13.160 |
| SRR2967015 | Control (root) | 14.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.748 |
| SRR9715740 | Leaf | 8.316 |
| SRR9715741 | Leaf | 6.885 |
| SRR9715739 | Root | 29.000 |
| SRR9715742 | Root | 15.107 |
| SRR9715743 | Root | 14.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.884 |
| SRR8749028 | MeJA induced 9h | 20.218 |
| SRR8749029 | MeJA induced 9h | 23.948 |
| SRR8749030 | Uninduced | 14.989 |
| SRR8749031 | Uninduced | 6.374 |
| SRR8749032 | Uninduced | 20.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.249 |
| SRR8400027 | Control - Root | 16.221 |