Gene detail

Gene detail information of Glyur002268s00033543.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52210.3	3.00E-108	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004502631.1	0	PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cicer arietinum]
Swissprot	tr\|Q5HZ60\|MCES2_ARATH	1.00E-133	mRNA cap guanine-N7 methyltransferase 2
trEMBL	tr\|V7ASJ5\|V7ASJ5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08554.1}

Sequence

Transcript Sequence

>Glyur002268s00033543.1
CTTTGCTGGGTACGCAGTTGCTAATTGCTGTCTTCTTGTTTCTCCGAGTGTGCATGAAGTAGTAATATGAAGAAATGAGTCAAATGGCGAGGAGCGAGTCCACCCATCAACGCCTCTACGATTTTGCNAAAATGGCACTCATCAAGATCTTCACTCACCCCTACGCCACCGTGTGCGACTTGTACTGTGGAGGAGGCGCTGATGCTGACAAATGGGTCGATGCCCAAATTGGCCACTACATTGGGATTGATGTTTCTTCGTCTGGGATAGACCAAATGCGAGAAGCGTGGGAGAGCAATAGGAAACTTCACACTGCTGAGTTCTTTGAGGTTGACCCTTGCACGGAGAATATAGAAATGCATTTGGAGGAGAAGGCCAATACGNCTGATTTTATTTGTTGTTTGCAGCATTTACAGTTATGCTTTGAAACCGAAGAGAAAGCACGGAGACTTCTTCATAATGTGTCATCTCTGCTGAAACCAGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTATCAGAAAAATGTTGAAGCATATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACNTGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCGTTATTTGGAAAGAAATACCAGCTGAAATTCGCTAATGATGTCTCTGCTGAAACCCATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTTCCTTCTTACTTATATCTCAAGATTGATGACCTGAGAGTTGTGCTGGTTGGCCAGGGAAGCTGGTCTCGAGTATGTCTCTATTCCACATTTATATTTCAAAAGCCTGACCCAGAAATCGCACCCCCAATTGCGAGTCCATTATTGCAAGATGCTAGTTATAATCACGATGAGGGAACGAGTTGGCGAGAAGATGAGATAAATGGACATGTAGTAGTAATAGAACCTTCTCTTGGGCTGGGAAAAATTAGCGAACAGAAAGGAATATTGGGCCCTGGCCCTGCAGATTTACGTTTTCCAGAGGCACTTTGACTTGTTGACCAAAAAAAAGAGGCACTTTGACTTTGACCGACAAAAAAAGAGGCACTTTACTGTTCTAATGAAGCTACAGTTTTAGCCGTTTTCGTTGTTCCTAATGCAGTTAGGCGTGTACTTTTTCCTTTTGNTTTTTCTAATGGTAAAGGTTAGGTGTTTTGTTTGACATGTAGTCAGTGCGTGTTAGCTTTTCTTTGGGTCTTCTGCCCCATGGATAGTAGAGTTACAATGTAATGAAGAACGAGTTTGACTTAATACCACTGACTTCTTAACAGTGAGTTAATATTATTATGTGTTATATTTTCTCTTTCTCCAAAATGTAACGANTCAATATTGCATTTTTGGTTTGGATTTTGCGTGGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02268	1628	10039	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00565	RNMT	EC:2.1.1.56	mRNA surveillance pathway	map03015

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002268s00033543.1	PF03291.11	Pox_MCEL	18	223	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.289
SRR1783600	control	8.009
SRR1783602	moderate drought stress	9.435
SRR1811619	moderate drought stress	9.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.595
DRR006520	Root Summer glycyrrhizin high producing strain	9.440
DRR006521	Root Winter glycyrrhizin high producing strain	8.870
DRR006522	Root Winter glycyrrhizin high producing strain	9.065
DRR006523	Root Summer glycyrrhizin low producing strain	9.734
DRR006524	Root Summer glycyrrhizin low producing strain	10.048
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.679
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.372
SRR2868004	Drought Stress (root)	9.280
SRR2967015	Control (root)	9.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.198
SRR9715740	Leaf	11.110
SRR9715741	Leaf	9.381
SRR9715739	Root	1.751
SRR9715742	Root	6.782
SRR9715743	Root	5.359

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.126
SRR8749028	MeJA induced 9h	11.710
SRR8749029	MeJA induced 9h	10.963
SRR8749030	Uninduced	8.222
SRR8749031	Uninduced	4.544
SRR8749032	Uninduced	5.908

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.584
SRR8400027	Control - Root	10.647