Gene detail

Gene detail information of Glyur002267s00039342.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45220.1	1.00E-162	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_003521940.1	0	PREDICTED: pectinesterase 2-like [Glycine max]
COG	YP_003404589.1	1.00E-30	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|I1JKR7\|I1JKR7_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur002267s00039342.1
ATGGAAGCTTTTCGCTTACAAATAGGAATTATTTTCTTACCCTTCTTGTTAACCTCTTTAGCTTCAGCTTATTCATGGAGTGATGCAAAGGCGTGGTGTAGCCAAACACCAAACCCTCAACCGTGTGAGTATTTCTTGAGCAACAACCCAACTTACACACACAAACTCATCAAACACAAAGCTGATTTCTTCAAGCTCTCATTACAACTTGCTCAAGAGAGAGCACTCAAGGGCCATGCAAACACTCTCTCACTCGGTTCAAAGTGCCGCAACCCACGTGAAACAGCTGCTTGGGCTGACTGTGTTGAGCTCTATGAACAAACCATCCTTAAGCTCAACAAAACCATAGACCCAAACACCAAGTGTTCCCAAGTCGATACCCAAACATGGCTCAGCACTGCTCTCACCAACCTTGAGACATGCAAAGCAGGGTTCTACGAGCTTGGTGTTCAAGACTATGTTTTACCCTTGATGTCCAACAACGTTACCAAGTTGCTAAGCAACACATTGGCTCTCAACAAGGTTCAATTTCAGGAACCAAGCTACAAAGATGGGTTCCCAACATGGGTCAAGCCAGGTGATAGAAAACTGTTGCAAGCATCTTCTCCATCTTCCCAGGCAAATGTAGTGGTGGCGAAAGATGGGTCTGGGAAGTACACAACAGTTAGTGCAGCCGTAAATGCTGCACCAAAGAGTAGCAATGGGAGGTATGTGATATACGTGAAGGCTGGGGTGTACAATGAACAAGTTGAGATAAAAGCAAAGAATGTCATGTTGGTTGGAGATGGTATTGGGAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGAACCACAACCTTCCGTTCAGCCACTGTTGACATCACATTTAGGAACACCGCTGGTGCAGCAAACCACCAGGCCGTTGCATTGCGTTCTGGATCCGACTTATCAGTATTTTACAGATGTAGCTTTGAAGGTTACCAAGACACACTGTATGTGCACTCCGAGAGACAATTCTACAGGGAGTGTGACATCTATGGCACGGTTGACTTCATCTTTGGCAATGCCGCTGTGGTTTTCCAAAACTGCAACCTCTTTGCAAGAAACCCTCCAAACAAAGTGAACACTATCACTGCCCAAGGAAGAACCGATCCAAACCAGAACACTGGCATTTCCATTCACAATTCTAGAGTTACGGCTGCCTCGGATTTGAATCCATACATGAACACAGGACCAGGTTCTTCAACAGCAAACCGAGTTAAATGGTCTGGATATCATGTTATTACTAGTGCTTCTGAAGCCTCAAAATTCACTGTTGCAAATTTCATCGCTGGGAACTCATGGTTACCTTCCACACGTGTGCCTTTCACCGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02267	161	2010	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002267s00039342.1	PF04043.10	PMEI	29	172	8.80E-22
Glyur002267s00039342.1	PF01095.14	Pectinesterase	208	401	3.60E-87
Glyur002267s00039342.1	PF01095.14	Pectinesterase	402	441	6.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.054
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	1.437
SRR8749029	MeJA induced 9h	1.935
SRR8749030	Uninduced	194.100
SRR8749031	Uninduced	894.072
SRR8749032	Uninduced	402.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.042
SRR8400027	Control - Root	0.006