Gene detail information of Glyur002266s00040302 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 1.00E-22 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | CAN63182.1 | 2.89E-62 | hypothetical protein VITISV_029266 [Vitis vinifera] |
| Swissprot | tr|P10978|POLX_TOBAC | 7.00E-20 | Endonuclease |
| trEMBL | tr|A5B5U5|A5B5U5_VITVI | 1.00E-62 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN63182.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02266 | 28055 | 32344 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002266s00040302.1 | PF07727.9 | RVT_2 | 150 | 230 | 5.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.776 |
| SRR1783600 | control | 3.658 |
| SRR1783602 | moderate drought stress | 3.322 |
| SRR1811619 | moderate drought stress | 3.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.253 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.663 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.300 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.309 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.128 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.592 |
| SRR2868004 | Drought Stress (root) | 2.671 |
| SRR2967015 | Control (root) | 2.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.984 |
| SRR9715740 | Leaf | 0.787 |
| SRR9715741 | Leaf | 1.469 |
| SRR9715739 | Root | 0.803 |
| SRR9715742 | Root | 2.832 |
| SRR9715743 | Root | 2.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.735 |
| SRR8749028 | MeJA induced 9h | 10.083 |
| SRR8749029 | MeJA induced 9h | 6.712 |
| SRR8749030 | Uninduced | 6.732 |
| SRR8749031 | Uninduced | 6.433 |
| SRR8749032 | Uninduced | 6.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.090 |
| SRR8400027 | Control - Root | 5.257 |