Gene detail information of Glyur002265s00037222 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56200.1 | 2.00E-107 | Transmembrane amino acid transporter family protein |
| NR | XP_003538492.1 | 0 | PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] |
| trEMBL | tr|I1LMW8|I1LMW8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G35830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02265 | 12207 | 14592 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002265s00037222.1 | PF01490.13 | Aa_trans | 23 | 230 | 1.60E-18 |
| Glyur002265s00037222.1 | PF01490.13 | Aa_trans | 233 | 347 | 2.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.979 |
| SRR1783600 | control | 4.978 |
| SRR1783602 | moderate drought stress | 14.835 |
| SRR1811619 | moderate drought stress | 15.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.082 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.959 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.802 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.153 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.536 |
| SRR2868004 | Drought Stress (root) | 78.939 |
| SRR2967015 | Control (root) | 115.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.833 |
| SRR9715740 | Leaf | 6.303 |
| SRR9715741 | Leaf | 16.494 |
| SRR9715739 | Root | 18.838 |
| SRR9715742 | Root | 18.502 |
| SRR9715743 | Root | 19.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.817 |
| SRR8749028 | MeJA induced 9h | 16.412 |
| SRR8749029 | MeJA induced 9h | 6.463 |
| SRR8749030 | Uninduced | 53.002 |
| SRR8749031 | Uninduced | 46.739 |
| SRR8749032 | Uninduced | 32.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.632 |
| SRR8400027 | Control - Root | 47.581 |