Gene detail

Gene detail information of Glyur002262s00035133

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16120.1	COBRA-like protein-7 precursor
NR	XP_007138964.1	hypothetical protein PHAVU_009G253300g [Phaseolus vulgaris]
Swissprot	tr\|Q8GZ17\|COBL7_ARATH	COBRA-like protein 7 (Precursor)
trEMBL	tr\|V7B256\|V7B256_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW10958.1}

Sequence

Transcript Sequence

>Glyur002262s00035133.1
ATGGCCTCGAACGTCAGTAGCCGTCGCCGCTGCTTCTTTTTCGCCGTCGTGGTCTTACCCATCTTCGCCGCAACGCCGTCAATGTCTCAGCCGCAAGCCGCCGATTCCTGCAACGGAATATTCCTGTCGTACACCTACACCGGCGGCGAGAGGCTGCCGCCGAACGTGTCGGACACGGCGGAGCAACCGTACCGGTTCGAGTCGACGCTGAGGGTGCTGAACAACGGGCTAGAGGAGCTCAAGTCGTGGAGGGTGTTCGTGGGGTTCCGGCACCGCGAGTGGCTGGTGTCAGCGACAAACGCCGAGCTCGCCGACGGGAAGAGCATCCCTGGCGACGTCGGGAACGGCACGGTGTTTGCGGGGTCGTCGGTGAGGGACCTGAANACGGCGGCGGCGACTGCGGGGGACATGGGGCAGATGGAGGCTCGGGTGGAGATGGTGGGGACAGTGTTTGGGGTTGCGCCACCCAGCGTGCCCATGCCTTCTAGCATAAACCTCGCTAATGATGGGTTCGTATGCGGTGAACCCTCTTCTCAAGGGAACAATGAGACTCATGTCTGTTGCACAAGTGATCCCAATTTCAAGACAAACATAACCACAGATGATGAAGAGTTCCAACCCCGACAACAGAATGGTGATCTCACCATCATGTACGATGTGACCAAAGCCTCCGATTCCAATTACTGGGCAGAGGTCACAATTTCTAACCACAACCCCCTTGGCCGTCTTGACAACTGGAGACTAACCTGGCACTGGAACAATGAAGAGTTCATACAGACAATGAAGGGTGCTTATCCATCAGTTGTGGATTCCTCTGACTGTGTCTTCGGTTCACAAGGTGAATTCTACAAGGACCATGACTTTGCCAACGTGTTGAACTGTGAGAGAACCCCAACAATTGTTGATCTTCCCCCATCAAGGTTCAATGACTCAGAACTTGGAAAGATCCCATTTTGCTGCAGGAATGGTACTCTATTGCCACCTTCAATGGACCCCAGCATGTCAGTTTCAAGGTTCCAAATGCAGGTCTACAAAATGCCACCAAACCTCAACCGCTCCCAGCTCACACCACCACAGAACTTTGAGATAAGAGGTACCACCATCAACCCTGAATACAGTTGTGGCACCCCAATAAGGGTTGGTCCTAGTGAATCTCCAGACCCAACAGGGTTACCTTCAAACATATCTGCAATTGCTAGCTGGCAGGTTGTGTGCAACATAACAAGGTCAAAAGGGTCAACCCCTAAATGTTGTGTCTCATTTTCAGCCTATTACAATGAGTCAGTTATCCCTTGCAACACATGTGCATGTGGATGCCCAAGTAACCCAGAGAGAACATGTAGTACTAATGCACCAGCTATGTGGCTTCCACCAGAGGCACTTCTTGTTCCATTTGAGAATAGAAGTGAAATGGCCCTTACTTGGGCTAGCATGAAAGATCTACCAGTTCCCAACCCTATGCCCTGTGGTGACAACTGTGGTGTGAGCCTAAACTGGCATGTTTACACGGATTACCGTAAAGGTTGGACAGCAAGGATCACACTTTTCAACTGGGGTGACACAGATTTTGCTGACTGGTTTGCTGCAGTGCAATTGGACAATGCTGCAGCAGGTTTTGAAGAAATGTATTCATTCAATGGAAGCACATTAGGGGGATTGAACAATACAATATTCATGCAAGGTAAGCTTGGGTTGAATTTTCTTGTGGCTGAAGCAAATGGGTCTGACCCAAGAAAAGATCCTAGGGTGCCTGGGAAACAGCAGTCAGTGATCTCATTTACAAAGAAAAATACTCCTGGGATCAATGTGGCTGGTGGTGATGGATTTCCCAGTAAAGTGTTCTTCAATGGAGAGGAATGCTCTCTTCCTTCAGTGTTTCCAAGCAGTGCTTTGAGGAAGGAGTTTTCCTTGGCTACTACTATTTTCCTGATACTGTTGCCAATCCTCTTGATGCGGCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02262	37414	40176	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002262s00035133.1	PF04833.10	COBRA	228	408	4.40E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.280
SRR1783600	control	2.305
SRR1783602	moderate drought stress	2.090
SRR1811619	moderate drought stress	2.173

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.824
DRR006520	Root Summer glycyrrhizin high producing strain	0.680
DRR006521	Root Winter glycyrrhizin high producing strain	0.089
DRR006522	Root Winter glycyrrhizin high producing strain	0.055
DRR006523	Root Summer glycyrrhizin low producing strain	1.633
DRR006524	Root Summer glycyrrhizin low producing strain	1.672
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.183

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.545
SRR2868004	Drought Stress (root)	19.097
SRR2967015	Control (root)	7.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.723
SRR9715740	Leaf	0.109
SRR9715741	Leaf	0.402
SRR9715739	Root	6.474
SRR9715742	Root	4.424
SRR9715743	Root	3.310

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.847
SRR8749028	MeJA induced 9h	1.391
SRR8749029	MeJA induced 9h	1.222
SRR8749030	Uninduced	53.787
SRR8749031	Uninduced	16.722
SRR8749032	Uninduced	2.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.964
SRR8400027	Control - Root	8.519