Gene detail

Gene detail information of Glyur002261s00043710

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60550.1	4.00E-82	cyclin p3;2
NR	XP_004514236.1	2.00E-137	PREDICTED: cyclin-U2-2-like [Cicer arietinum]
Swissprot	tr\|Q9M205\|CCU22_ARATH	2.00E-114	Cyclin-U2-2
trEMBL	tr\|B7FJB0\|B7FJB0_MEDTR	7.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK49335.1}

Sequence

Transcript Sequence

>Glyur002261s00043710.1
GGCCAAAATCCNTGTCATTTCCCTCTTTCTTTATTCATCCCTTCCAACCCAAGTCCCTCACTTCCTCACTCATTCCATTGCCGACTCTATTATTCTCCTCTATATATAAAAGCCTACTCCCAAAACCTTTCTACACTACCAAAACCCCACCATCACTTCGTGCTTGACAACAATTTTTTTTTTTGGAAAAACAAAAGGCCAACTTTCCCTTTTCTTCATGGCTTCTTCTTCTCTAACAATTTCCCCAAGAAAGCTTCGTTCAGATTTGTATTCCTATTCCTACCAAGAAGATTCTAACACCCCATTGGTGATAAATGTCCTGGCTTCACTGATTGAAAGAAGCATGGCCAAAACANAGAGAATCATCAAGAATTGTTCTCGGTCTTTGTCCAAGGCCATTAGCACAAACATGTTTGATTGTAGGGAGATCCCTGACATGACAATCCAATCCTATTTGGAGAGAATTTTCAGGTACACTCGAGCAGGACCCTCGGTGTATGTTGTGGCCTATGTCTATATTGATAGGTTTTGCCAGAACAACCCTGGATTTAGAATCAATGCCAGAAATGTGCATAGNCTTCTCATTACGACTATCATGGTGGCTTCCAAGTATGTTGAAGACTTGAACTACAGAAATTCCTACTTTGGGAGAGTTGGTGGATTGACAACTAATGAGCTGAACAAGTTGGAGCTGGAATTCCTTTTCATGATGGGTTTCAAATTACATGTAAATGTGAGTGTTTTCGAGAGTTATTGTTGCCATTTAGAGAGGGAAGTAAGCATTGGAGGAGGGTACCACATTGAGAGGACTCTAAGGTGTGCACAGAAGAAATCAAAGCAAGGCATAGAGAAGAAAGGGGTTACACACAGATTATTGCTCGTGTGATNCTGTAGTCTAAGTAGGGACTTCTGCTATGTTGCTTTTATGTGTATAGATCATACATCGGTATAAATCTAATAAATGTTTGTTGGGGTATTGAGATTTAGGGATGATGACACGAGAGCAAAGCCAAAGCATGAGGAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02261	30532	31997	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity

molecular_function
GO:0019901 protein kinase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002261s00043710.1	PF08613.6	Cyclin	31	169	5.00E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.792
SRR1783600	control	4.983
SRR1783602	moderate drought stress	3.181
SRR1811619	moderate drought stress	3.129

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.672
DRR006520	Root Summer glycyrrhizin high producing strain	12.647
DRR006521	Root Winter glycyrrhizin high producing strain	0.216
DRR006522	Root Winter glycyrrhizin high producing strain	0.211
DRR006523	Root Summer glycyrrhizin low producing strain	17.917
DRR006524	Root Summer glycyrrhizin low producing strain	17.986
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.708
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.796

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.031
SRR2868004	Drought Stress (root)	12.821
SRR2967015	Control (root)	13.999

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.048
SRR9715740	Leaf	1.221
SRR9715741	Leaf	0.558
SRR9715739	Root	4.220
SRR9715742	Root	9.961
SRR9715743	Root	8.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.634
SRR8749028	MeJA induced 9h	0.372
SRR8749029	MeJA induced 9h	0.986
SRR8749030	Uninduced	0.062
SRR8749031	Uninduced	0.261
SRR8749032	Uninduced	0.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.102
SRR8400027	Control - Root	39.171