Gene detail

Gene detail information of Glyur002259s00033472

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60900.1	1.00E-178	U2 snRNP auxilliary factor, large subunit, splicing factor
NR	XP_007148616.1	0	hypothetical protein PHAVU_005G001300g [Phaseolus vulgaris]
COG	YP_008088250.1	2.00E-10	RNA-binding proteins (RRM domain) [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9ZR40\|U2A2B_NICPL	0	Splicing factor U2af large subunit B
trEMBL	tr\|V7BU84\|V7BU84_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20610.1}

Sequence

Transcript Sequence

>Glyur002259s00033472.1
TTGTCGTCGAACGAATATATGATAATACTTCAGTGATCACTCATCATCGGTGAGATATATTATATAGAGAGAGAGGGTGGCATTTAGATATATCACCACACCACACCAAATCAGTTTGCGAAGCAGAGAGAGAGATGGCTGAATACGAATTAGAAGAAGAAAGATACGAACAAGAAGATCAGAGATACGAACAAGAAGAAGATGAAGAAGAGCATCACCGCCACCACCACAACACTCATCATGCCGCCGACTCCTCTCCTCTACCACCTTCCGACGATCTCACNGACTCCAAATCTCACCGTGGATCTCGTGATTTTGACAGAGAATCTTCCAGGAGTAGAGAAAAGGATCGAGAGAAAGGGAGAGAAAAGGAGAGGAAGAGGGAAAAGGGAAGGGACAGGGACAGGGACAGGGAGAGAAGCAGGGACAGAGATAGGGACAGGGAGAGGAGCAGAGACAGAGATAGGGACAGGGACAGGGACGACAGGGGGAGAAGCAGGGACAGAGATAGGGATAGGGAGAGGAGCAGGGACAGGGACAGAGATAGGGAGAAAAGCAAAGACAGGGAGCGTGATCGGGATGGGGAGAAGGAAAGGGACCGGGACCGCGATCACCATCATAGGGATCGACACAGGGATCGTAGTGAGAGAAGGGGAAGGGATAGAGATGATGATGATTATTACAGAANCCGGGACTATGACAGACGAAGGGATTATGATAGAGAGGATAGGCATAGGCGTAAGTCTCGATCTAGATCACGGTCAAGGGCTCGATCTGAGCATAGATCAAGGTCAAGGGCTCGATCTGAACATAGATCAAGGTCGCGTTCTCGTTCACGCTCAAAAAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCATTGTTGGCTGGTGCTTCTGCTGTTGCAGTATATATAATTCTTGAAGACTGGTTTCCCATGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATATCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACAATTACCTACTTTGGTCAGATCCCTGGTGCAAATCCTGCAATTCCCGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGGTATCTTTCATTTTGTTCCCAAGTCTGNTTATGCGGGATGATGTTTTTATCCATTTCACCATGTTTTCGTTTGTCTTTTTTAAGTTGCAGCCATTTAGTGCTCTNCCTGTCATGCCAGTTCAGGCTATGACGCAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTCCCTCCTACAGCTAATGAACAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTAAGATTGGAGGAAACACTGCTGGTCCGGGTGATGCAGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTCGTTGAGATGAGGTCTGTTGAGGAAGCTAGTAACGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTACCCTAGGGCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTCTAACACCTGGGTCTGCTGGTGGACTTGATGGTCCTGATCGGATTTTTGTGGGTGGACTTCCTTATTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCACTTCGGGGTTTTGATCTNGTGAAAGATAGAGAAACAGGGAATTCGAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCATGNGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCTAATCAAGGTACAAACCCACAGCAGCCTAAGCCGGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTGCTCTGCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGTTGTGTTTAACTCATGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTATGAAGAAATTCTTGATGATATGAGAACAGAATGCTCCAAATTTGGTACTTTAGTGAATGTGGTGATCCCCCGCCCANGGCCCAGTGGTGAACCATGCCCTGGTGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTTGATGGTGCTACAAAAGCCCGTGCTGGACTGAATGGACGAAAATTCGGTGGAAATCAAGTTGTNGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAATTGTGTTCGTGTCTCTTGGATTGTATCTTAATTGAGGATTTCTTAGCAATAGCAATAGCAAGGATTATCTTTTGTATTACTAACTAGTTATGGGCATATGGTACAGAAACTGTTCTNTTTAGTGGGAGTAGCACATGATGGAGAATTTGTTAATAGGACATGGATCTATTTGGTCCCTTCACAAATTCGTTATACTCTTGAGTGAGGTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02259	33479	39715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006397 mRNA processing

cellular_component
GO:0005634 nucleus

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002259s00033472.1	PF14259.1	RRM_6	390	465	2.40E-10
Glyur002259s00033472.1	PF00076.17	RRM_1	510	579	8.20E-17
Glyur002259s00033472.1	PF13893.1	RRM_5	651	707	5.80E-07
Glyur002259s00033472.2	PF14259.1	RRM_6	339	414	2.20E-10
Glyur002259s00033472.2	PF00076.17	RRM_1	459	528	7.50E-17
Glyur002259s00033472.2	PF13893.1	RRM_5	600	656	5.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.561
SRR1783600	control	46.907
SRR1783602	moderate drought stress	90.163
SRR1811619	moderate drought stress	90.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.413
DRR006520	Root Summer glycyrrhizin high producing strain	43.069
DRR006521	Root Winter glycyrrhizin high producing strain	78.899
DRR006522	Root Winter glycyrrhizin high producing strain	75.859
DRR006523	Root Summer glycyrrhizin low producing strain	43.063
DRR006524	Root Summer glycyrrhizin low producing strain	44.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.430
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.233

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.689
SRR2868004	Drought Stress (root)	61.237
SRR2967015	Control (root)	69.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.512
SRR9715740	Leaf	32.071
SRR9715741	Leaf	43.958
SRR9715739	Root	6.732
SRR9715742	Root	25.827
SRR9715743	Root	23.651

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.735
SRR8749028	MeJA induced 9h	59.193
SRR8749029	MeJA induced 9h	57.064
SRR8749030	Uninduced	48.474
SRR8749031	Uninduced	36.173
SRR8749032	Uninduced	44.570

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	80.080
SRR8400027	Control - Root	69.803