Gene detail

Gene detail information of Glyur002259s00033470

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33800.1	3.00E-66	Protein of unknown function (DUF579)
NR	XP_003598051.1	4.19E-96	hypothetical protein MTR_3g005710 [Medicago truncatula]
COG	YP_005070644.1	3.00E-27	TPR domain protein [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9LQ32\|GXM3_ARATH	7.00E-82	Glucuronoxylan 4-O-methyltransferase 3
trEMBL	tr\|G7J059\|G7J059_MEDTR	2.00E-96	Uncharacterized protein {ECO:0000313\|EMBL:AFK39995.1}

Sequence

Transcript Sequence

>Glyur002259s00033470.1
AACGACAATGAATAAAATAGGGAGTGAAAATGTGTGATGGGTGTATAGTGGTGGTCTATGTAACATTTTCCTTATCTTCCTTTCTCTGTTTCAACGCCACGTTGGTTTCACTTTGCCCCCAAGCAAATTAAGACATCTTTCTTTCACATAAATAAATTGAATGCCGAATTCTTGTTTAAATGAAACTGATACCTATACCCTTTAAGACCTGAGTACTCTCTCTAACTCCAAGGAGAAGATCAAAATCAAAAAAGCATGAGATCCAAAACGCAATTCACATGCACTCTCAAGGTAGCCCTTCTCTGCCTCGTGTTCCTCTTCCTCTTCATCTTGCTATTCCGATCATCCACATTCCCAATATTTTCCCAGCAACTCAATACCCCACAGCCCCCAAACCTGTCAAAAATCGTTAATTCAGCAGAAGAAGNGCACCTGCATCACTGGCGAATGCACTGATCCACTACGCCACCACCAACATCACCCCTCAACAGACCATCCACGAGATCTCTGTCTCAGCAAGAGTCCTGCAGAGGAAGTCGCCGTGCAACTTCCTCGTGTTCGGCCTCGGCCACGACAGCCTCATGTGGACATCCCTCAACTATGGCGGCCGCACCGTGTTCCTTGAGGAAGACAAGTCCTGGATCGAGCAAATCCAACAGAAGTTCCCAACTCTGGAGTCTTACCATGTGTTGTATGACACCAAGGTGGGTGACCCGAGATTCTCCAAGTGCCAATTGGCGCACAAGGGGTTCCCNAGTGATGTGTATGACACGGATTGGGATGTGATCATGGTGGATGCACCCACCGGTTACTTCGACGGAGCACCGGGGAGGATGACCGCNATCTACACGGCGGGGTTGATTGCAAGGAACAGAGAGAGCGGTGAGACTGATGTGTTTGTGCACGATGTGGATAGGAAAGTGGAGGACAAGTTCTCAAAAACGTTTCTGTGTGAAGGGTATTTGAGGGAACAAGAAGGAAGGATAAGACACTTCACCATCCCAAGCCACAGGACTCGGCTGGGTAGACCCTTTTGCCCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02259	27710	29476	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002259s00033470.1	PF04669.8	Polysacc_synt_4	1	138	1.10E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.525
SRR1783600	control	25.250
SRR1783602	moderate drought stress	23.445
SRR1811619	moderate drought stress	24.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.471
DRR006520	Root Summer glycyrrhizin high producing strain	44.630
DRR006521	Root Winter glycyrrhizin high producing strain	0.533
DRR006522	Root Winter glycyrrhizin high producing strain	0.521
DRR006523	Root Summer glycyrrhizin low producing strain	20.786
DRR006524	Root Summer glycyrrhizin low producing strain	18.992
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.020

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.462
SRR2868004	Drought Stress (root)	29.615
SRR2967015	Control (root)	26.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.594
SRR9715740	Leaf	10.156
SRR9715741	Leaf	8.669
SRR9715739	Root	23.227
SRR9715742	Root	30.708
SRR9715743	Root	26.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.034
SRR8749028	MeJA induced 9h	0.093
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.110
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.668
SRR8400027	Control - Root	28.282