Gene detail

Gene detail information of Glyur002259s00033469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40910.1	5.00E-100	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003613758.1	0	Disease resistance-like protein [Medicago truncatula]
COG	YP_007098491.1	2.00E-07	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|O82500\|Y4117_ARATH	5.00E-97	Putative disease resistance protein At4g11170
trEMBL	tr\|K7K1U0\|K7K1U0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G05710.2}

Sequence

Transcript Sequence

>Glyur002259s00033469.1
ATGGGATTTATTGTGCAGGGGATTTATTTGGAGATAGCTAGTGGAAGAAAACTCATTGAGGTTAAAGGCAAGGAAGGTACAATAACAAATCTATACTGCAATTTGCAATTGGAGCATCTATTCGGCGTTGGAGTTGCTCTGAGGCATTGCAATTTGCAATTGTCTGACTTCATTTTCCCTCTGACTCCATTGTTGCTCAACCAGATTTCTACACATACATCTGCCGCTACATCCTTCTCCTTCTCAACAACAATTGCGGCCATGGCTACCATGAGAAACCCAACACTCTCGTCCTCCTCTTCCTTTACCTATGAATGGGCTTATGATGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGTGAGGGCTTTACTGGACACCTCTACAATGATCTGTGCAAAAAAGGAATCAACACTTTCATGGATGATCAAGAGCTTCAGAAAGGAGATGAAATCACCCCATCTCTCATGATGGCAATCCAACAATCTAGGATTGCAATTGTGATTTTCTCAAAAAACTATGCATCTTCTAGCTTTTGTTTGGAAGAACTTACAGAGATCATGGAGTGCATAAAACACAAGGGCAGGTTGGTCTGGCCAGTCTTTTATCAAGTGGACCCTTCTGATGTGCGCCATCAGAGAGGGAGTTATGCAGACGCACTAGCCGAGCATGAAAGAAAAAATATTGACAAGGAGAAAATCAAACGGTGGAGGTTAGCTTTGCAAAAGGCAGCTAACCTGTCAGGTTCCCATTTCGAACATGGGTATGAATATGAGTTCATTGGGAAGATCACTCAAGAGGTCTCTAAAAAGATTAATCGTAAACCTTTACATGTTGCTAAGTACCCTGTTGGGTTAGAGTCTCGAGAGATGCTTCTTTTTGAATTAGCTGGGTTACAGGATGTGAAGTTGTGGAATGTAAATAAAGGAATTCCTATAATTAAAAGCAGGCTCTGTCAGAAAAAGATTCTTTTGATTTTGGATGATGTTGACAGATTGGAGCAACTAGAAGCACTTGCTGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAATTATCATCACAACAAGGGATAAGCATTTGCTACAGGTTCATGGTGTTGAAAAAACCTATGAAGTACAAGTACTAAATCATGAAGAAGCCATTGAATTGTTTAGTTGGAATGCTTTCAAAACACAAGAAGTGAATCCTAATTATATGGACATTTCAAAGACAGCAGTACTTCATTCTGATGGCCTTCCATTGTCACTTGAAATAATAGGTTCTGACCTATGTGGTAGAACAACATTGGAATGGAAATCGGCTTTAGAAACTTATGAGAGAATTCCTCATGAGAACATTCTGGAAATCCTCAAAGTAAGCTATGATGGCTTAAAGGAAATTGAAAAGGAAATCTTTTTAGACATTGCTTGCTTCTTCAAAGGAGACAATCAAAGTGATGTCATGGCCATACTACACAGCGGTCGCGGCTTCGCCCCAGACTATGCTATCGGGGTGTTGATTGATAAAAGTCTGATAAAACTTGATGGCAATCGTGTGATGATGCATGACATGATTGAAGATATGGGTAGAGAAATTGTGCGGCTGGAATCCCCCTTAAAACCAGGTGGACGCAGTAGATTATGGTTCCCCAAAGATATTCTTCATGTTTTCAAGGAGAACAAGGGATCTGATAAAACTGAGATCATCATTCTGCGCCCGCCAAAACATAAAACGGTGCAGTGGGATGGAAATGCATTGAAGCAGATGGAAAACCTCAAAATACTGGCCATAAAAAATGCAAGCTTTTCCATGGGACCTAATCATCTCCCAAATAGCTTAAGAGTGCTAAAATGGAGTGCATATCCAGAATCATCACTGCCAGCTCATTTTAATCCAAAGAAACTCGTCATACTTGACTTGTATGAGAGTTTCATTACATTCGAAAATCAACTGATCATGAAATTCAAGTCTTTGACGAAAATGAATTTAAGAGGTTGTGAATCCTTAAAGCAAGTACCTGACATGTCTGGAGCCCCAAATTTGAAGAGTCTGCAACTCTTTTGTTGTGAGAATTTGGTTGAAGTTGATGATTCCGTTGGATTCCTTGGAAAACTTGAATATTTGGATCTTGGTGAGTGCGGAAGTCTCAGGGTTCTTCCTCATGGCATCAACTTACCTTCTCTTAAATCCCTGTCCCTTTGGGGTTGTAGAAGTCTCAAGAGTTTTCCAGAAATATTAGACAAGATGGAAAAGCTAACAGATCTTCGTTTGGATCGTAGCGGCATAAGTGAATTGCCTTTTTCAATTGGACGCCTCGTGTGCCTTGAGGTTCTGACTATGTCCTATTGTGATGAGCTACTTGTACTGCCGAGTAGTATTTTTATGCTGCCAAGACTTGAGACCTTGAAAGCTAACGGTTGTGCGGGAATTGCACGGATAAACATGGGGGAAGGGATTTGTCAAGAGCTAGAAACAATCTCCTCAAATGTGACAACACATGTTGACTTCAGCTATTGTCACCTGTCAGATGAATTTGTCGCTACACTTATTCCTTTCATGCACCATGTCAGCACATTAAAACTTATTGGCAGCAGCATCAGAGTCCTTCCGTCATGCATCAATGCATGTCGCTCTATGAAGGTACTTAACTTGAACAATTGTAAGGAGCTTCGAGAAATCAGCGGGCTGCCGCCAAACATAGAATATGTTCAAGCAAAAAATTGTACATCGTTGACTTCCCAATCAATGATGTTACTAGAACAGGGGTGTGCCTTGCGGTGGAGCAATGATCTATGGAGAAGGAGGGGGAAACGAGGCAGGTCCATCGAGTATCAGATCTCGGCAGCGCGGAGGAAGAAAACCGAAAATGGAAGAATAACTGGGAACAGATATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02259	7729	12151	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002259s00033469.1	PF01582.15	TIR	110	241	1.10E-36
Glyur002259s00033469.1	PF00931.17	NB-ARC	308	486	8.10E-31
Glyur002259s00033469.1	PF13504.1	LRR_7	719	736	0.78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.706
SRR1783600	control	11.510
SRR1783602	moderate drought stress	10.935
SRR1811619	moderate drought stress	10.939

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.026
DRR006520	Root Summer glycyrrhizin high producing strain	5.950
DRR006521	Root Winter glycyrrhizin high producing strain	3.016
DRR006522	Root Winter glycyrrhizin high producing strain	2.712
DRR006523	Root Summer glycyrrhizin low producing strain	3.029
DRR006524	Root Summer glycyrrhizin low producing strain	2.971
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.363

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.755
SRR2868004	Drought Stress (root)	4.985
SRR2967015	Control (root)	6.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.332
SRR9715740	Leaf	4.416
SRR9715741	Leaf	5.064
SRR9715739	Root	0.840
SRR9715742	Root	5.861
SRR9715743	Root	4.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.336
SRR8749028	MeJA induced 9h	7.482
SRR8749029	MeJA induced 9h	3.537
SRR8749030	Uninduced	2.498
SRR8749031	Uninduced	2.251
SRR8749032	Uninduced	1.472

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.846
SRR8400027	Control - Root	11.857