Gene detail

Gene detail information of Glyur002259s00033468

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	2.00E-36	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003613758.1	2.17E-178	Disease resistance-like protein [Medicago truncatula]
COG	YP_006866864.1	4.00E-08	lipoprotein, leucine rich repeat protein [Psychroflexus torquis ATCC 700755]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-35	TMV resistance protein N
trEMBL	tr\|G7KDY8\|G7KDY8_MEDTR	8.00E-179	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AES96716.1}

Sequence

Transcript Sequence

>Glyur002259s00033468.1
ATGGGACAGGTGGCAGAACATCACATGTATAGCAAATGTTATGATCCTAATATTTTAACCCCATTGTTACAAATGCATCACTTGAGCACACTATACGAATGTCTTCTTTCAACCAGGGTTGAGCAGATAAATGAAGCCCTCTATGTGTTTGCATTTCCTCTGCAAATTGGAGATAGAAAAGCATTATTATCTTACTGGGTTATTCTTCATGTTTTCAAGGAGAACAAGGGACCTGATAAAACTGAGATCATCATTCCAGACCTGCCAAAACATAAAACAGTGCAGTGGGATGGAAATGCATCGAAGCAAATGGAAAACCTCAAAATACTGGTCATAATAAATGCAAGCTTTTCCAGGGAACGTAATCATCTCCCAAATAGTTTAAGAGTGCTAAAATGGCGTGGATATCCAGAATCGTCGCTGCCAGCTCATTTTAATCCAAAGAAACTCGTCACACTTGACTTGTATGAGAGTTTCATTACATTCGAAAAGCAACCGATCATGAAATTCAAGTCTTTGACGGAAATGGATTTAACCTGTTGCAAATCCTTAAAGCAAGTACCTGACATGTCTGGAGCCCAAAATTTGAAGAGGCTGAATATTTGTCATTGCAGGAAATTGGTTGAAGTTCATGATTCCGTCGGATTCCTTGAAAAACTTGAATATTTGGATCTTCATAAATGTAAAAGTCTTGGGGTTCTTCCTCGTTGCATCAACTTACCTTCTCTTCAATACCTGTCCCTTGAGGGTTGTAGAAGTCTCAAGAGTTTTCCAGAAATATTAGACAAGATGGAAAAGCTAACAAAGCTTCGTTTGGGTCGTAGCGGCATAAGTGAATTGCCTTTTTCAATTGGACATCTTGTGTTGCTTGATCATCTGGATATGCCCTATTGCGATGAGCTACTTGTACTGCCGAGTAGTATTTTTATGTTGCCAAGACTTGGGACCTTGAACGCTTACGGTTGTGCGGGAATTGCACGGATAAACAAGGGGGAAGGGATTTGTCAGGAGCTAGAAACAATGTCCTCAAATGTGACAACACATGTTGACTTCAACTATTGTCACCTGTCAGATGAATTTGTCGCTACACTTTTTCCTTTCATGCACCATGTCAGCACATTAAAACTTGATGGCAGTAGCATCACAGTCCTTCCGTCATCCATCAATGCATGCAGCTCTATGAAGAAACTTACCTTGAACGATTGTGAGAAGCTTCGAGAAATCAGAGGGCTGCCACCAAACATAGAATATTTTGAAGCACAATATTGTACATTGTTGACTTCCCAATCAAAGGAAATATTACTGAATCAGATGGTGCTCAATTCCACCTCCATGGTCAAACTTGTCTGTTTTCCTGGATCAACTATCCCATGGTGGTCAAATCCATTGTACAGATCGGAGCAATCATTGTCCTTCTTGTTCCGTAACAAATTTCCAGCAATCGCTCTGTGTGTTGCTGGAGTTTTGGGTCCTATGCAGCATTCATATGGTAAAGCACTTGTTAAGTTTGAGTTCGACCTGATCATTAATGACAGACCATGGTTCCCGTACATTCTCCATGTTGGGTGGATTGAACCTGATCATACAAGGATTTTTCTACCAAATCATATAATTCTGCTTGATCTGAAGTTCAAAAATGGCCTTGATAAGATTGGAAAACTACATTTTGAGAATGAATGGAACCTTGCTGCGATTTCATTAGTGAATAAGATTGAAACTATGGTAGATATTAAATGGATGAGAGTTCATGTACTGGAACAAGAAACAAACATGGAGGATTTTCAAATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02259	4573	6756	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002259s00033468.1	PF13855.1	LRR_8	195	252	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.179
SRR1783600	control	0.103
SRR1783602	moderate drought stress	0.252
SRR1811619	moderate drought stress	0.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.545
DRR006520	Root Summer glycyrrhizin high producing strain	0.647
DRR006521	Root Winter glycyrrhizin high producing strain	0.249
DRR006522	Root Winter glycyrrhizin high producing strain	0.322
DRR006523	Root Summer glycyrrhizin low producing strain	0.584
DRR006524	Root Summer glycyrrhizin low producing strain	0.532
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.435

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.882
SRR2868004	Drought Stress (root)	8.312
SRR2967015	Control (root)	4.120

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.437
SRR9715740	Leaf	0.035
SRR9715741	Leaf	0.371
SRR9715739	Root	0.000
SRR9715742	Root	0.258
SRR9715743	Root	0.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.020
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.270
SRR8400027	Control - Root	0.128