Gene detail

Gene detail information of Glyur002257s00039815

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59240.1	2.00E-79	Ribosomal protein S8e family protein
NR	AFK40150.1	2.63E-136	unknown [Lotus japonicus]
COG	YP_004485025.1	7.00E-15	30S ribosomal protein S8 [Methanotorris igneus Kol 5]
Swissprot	tr\|Q08069\|RS8_MAIZE	2.00E-139	40S ribosomal protein S8
trEMBL	tr\|C5YDP0\|C5YDP0_SORBI	5.00E-138	40S ribosomal protein S8 {ECO:0000256\|RuleBase:RU000669}

Sequence

Transcript Sequence

>Glyur002257s00039815.1
GTTTCATATATAACGCAGCTAGGGTTTTATCAGAAACCGGTCGACACAGAAGCGCACAGAGAGAGCGAGAGTGGGAGAGAGTTAGAGAGAGAGAGCTCCACGGTCGACCAAGATGGGTATTTCTAGGGATTCCATGCACAAGAGGAGAGCCACTGGTGGCAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTACGAGCTTGGTCGCCAGCCAGCAAACACTAAGTTGTCAAGCAACAAGACAATCAGGAGGATTCGTGTTAGAGGTGGCAATGTGAAGTGGAGAGCTTTGAGATTGGATACTGGAAACTACTCCTGGGGTAGTGAGGCCGTAACTCGCAAGACTCGTATTCTGGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGTACTCAGACTCTGGTCAAGGGTGCTATTGTCCAGGTTGATGCTGCTCCGTTCAAGCAGTGGTATGTTCAGCACTATGGTGTTGAAATTGGTAGAAAAAAGAAACAATCATCCAAAAAGGAATCTGCAGAGGAGGGTGAAGCTGCTGCTGCTGCTGCTGCTGAAGAAACCAAGAAAAGTAACCACGTGCAGAGAAAACTTGAGAATCGCCAGAAGGATCGTAAGCTTGACCCCCACATTGAGGAGCAGTTTGGCGGTGGCCGATTGATGGCCTGTATTTCTTCTCGTCCTGGTCAATGTGGCAGGGCTGATGGGTACATTCTGGAAGGTAAGGAGCTGGAATTTTACATGAAGAAATTACAGAGGAAGAAGGGAAAGGGTGCTGCTTAATTCTAGTGCTTTACAAACTTATTATATATGGCTTTGTTTGTTTTTCTTGGAGATTGGTACCATTCAAGCTGATGTCGTTTACNTTGTTTAATACTGTTGATTGGACCAGCTTTAGGCCCGACGCATCGTTAGTGTCAACGCTTTACTAGTTTTATGGCAATTTCATCCAAATTTTGCTTTTAAACTGTTTATTTTACTGATTATCTACTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02257	37732	40547	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002257s00039815.1	PF01201.17	Ribosomal_S8e	1	200	3.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	185.843
SRR1783600	control	186.219
SRR1783602	moderate drought stress	217.864
SRR1811619	moderate drought stress	217.133

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	489.014
DRR006520	Root Summer glycyrrhizin high producing strain	485.004
DRR006521	Root Winter glycyrrhizin high producing strain	337.361
DRR006522	Root Winter glycyrrhizin high producing strain	328.820
DRR006523	Root Summer glycyrrhizin low producing strain	427.690
DRR006524	Root Summer glycyrrhizin low producing strain	425.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	204.657
DRR006526	Leaf Summer glycyrrhizin high producing strain	203.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	820.132
SRR2868004	Drought Stress (root)	527.365
SRR2967015	Control (root)	554.183

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	267.227
SRR9715740	Leaf	234.721
SRR9715741	Leaf	213.627
SRR9715739	Root	134.829
SRR9715742	Root	266.963
SRR9715743	Root	241.967

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	953.171
SRR8749028	MeJA induced 9h	497.418
SRR8749029	MeJA induced 9h	887.713
SRR8749030	Uninduced	163.954
SRR8749031	Uninduced	111.385
SRR8749032	Uninduced	155.334

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	512.568
SRR8400027	Control - Root	457.217