Gene detail

Gene detail information of Glyur002257s00039812.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07320.1	4.00E-177	O-Glycosyl hydrolases family 17 protein
NR	XP_004492271.1	0	PREDICTED: probable glucan endo-1,3-beta-glucosidase A6-like [Cicer arietinum]
Swissprot	tr\|Q06915\|EA6_ARATH	0	Probable glucan endo-1,3-beta-glucosidase A6 (Precursor)
trEMBL	tr\|A0A072TYH8\|A0A072TYH8_MEDTR	0	Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313\|EMBL:KEH22559.1}

Sequence

Transcript Sequence

>Glyur002257s00039812.1
ATTTTTTCCCTCACCTCCGCAATAGTGTTTGTACTAATTTATAGCATAGGTCGATTTTAAATCGACAGAGGTTCCAGCTGGAGACAAACAGAGCAAAAAAACAAGTCATAGTTTAGGTATCCTCGAAAACCTCTCACATACACAAAGCTTCCATTCCATTCCATTCCCTCCAGTTTTTTAGAGTGAAAAAAGCAAACATACCCAACAAAAAACAACAAAAAAATGGCTATGGCTATGGCTCATCTTGTCATTCCACTGTTAGCATTGTCCACACTCTTCAACATCTCAAGTAGTGTTGCTGCATCAAAGTTCTCATCCCAGCCAGGAATCTGCTACGGCCAACTAGGGAACAACCTTCCACCACCATGGAAATCAGCGGAGCTCATAAAATCCCTAAAAGCCAAACGCGTCAAAATCTACGACGCCAACCCACAAATCCTAACCTCACTAAGCAACACAAACCTCCAAGTCTCCATCATGGTACCCAACGAAATCATCACCAACATCTCCACAAACCAAACCCTCTCCGATAATTGGATCAAAACCAACCTCGTACCCTTCTACCCCAAAACCCTAATCCGCTACCTCCTCGTCGGCAACGAAATCATCTCCTCCACCGACAATGCCACGTGGCACCACCTCGTCCCCGCCATGATACGAATCAAACGCTCCCTCCAAACATTCGGAATCAAAAGGGTCAAGGTGGGAACTTCCTCCGCTATGGACGTTTTGCAAACCTCGTTCCCACCTTCAAACGCTGCGTTTCGTGAAGACATTGAGACCCAAGTCATGAAACCCTTGCTCCGGTTCCTTAACCGGACCAAATCGTTCTTCTTCTTGGACGTTTACCCTTTCTTCGCTTGGTCCTCTGATCCGGTTAACATTGACTTGGACTACGCGCTTTTTCGTGGGGTGGAGAAGAATGTTACCGTTACGGATCCGGCTTCGGGTTTGGTTTACACGAACCTGTTTGACCAGATGGTTGACGCGGTTTATTTCGCGATGGATCGGCTCGGGTTTCCGGGTATTCGGATCTTTATAGCGGAAACGGGTTGGCCCAATGGTGGTGACCTTGACCAGATTGGGGCTAATGTTTTTAATGCGGCTACTTATAACCGAAATTTCGTGAACCGGGTTATGAAAAAACCAGCTGTTGGAACCCCGGCTCGACCAGGTTGGGTTCTTCCATCGTTTTTGTTTGCTCTTTTTAATGAGAACCAGAAACCGGGTCCGGGTACGGAACGGCATTTTGGGTTGTTGCATCCGAATGGGTCGGGTGTTTATGGGATTGATTTGTCCGGGAAGACGCCGGANTCGGAGTTCATGCCGCTGCCGGAGCCGGTGAACAATGCACCGTTCAAGGGGAGGATATGGTGNATGGCTGTGCGTGGGGGGAATGAGACGGCAGTGGCGGCAGCGTTGTCGTATGCGTGCTCNCAGGGGAACCGGACTTGTGAAATGATCCGACCCAAGAAACCATGTTTCAGACCCGATTCGGTTTTCTGGCATGCGAGCTACGCGTTTAGTTCGTATTGGGCGCAGTTTAGGAAGTCAGGGGGCACTTGTTACTTCAATGGGCTTGCCACGCAAACTGCTAAGGATCCAAGTTATGGATCGTGCAAGTTCCCAAGTGTGACACTTTGAAGGAGAGGAATCAAATCAAGCAATTAGAGTTATCGTCACTCCATCATTTAATCATTCTTTCATTGACTGTAGGAAATTTGAATATGGGGTCCTTTTTACTGTAGTCTAATGTTGCTTTCATTTCATGAATGTGGTTCCAGTGACATTTGAACCCAACAAGGAGGAACTTACATTGATGAATTATTTTGAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02257	4736	7410	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002257s00039812.1	PF00332.13	Glyco_hydro_17	35	357	4.40E-100
Glyur002257s00039812.1	PF07983.8	X8	390	455	2.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.245
SRR1783600	control	21.445
SRR1783602	moderate drought stress	15.759
SRR1811619	moderate drought stress	15.487

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.424
DRR006520	Root Summer glycyrrhizin high producing strain	27.322
DRR006521	Root Winter glycyrrhizin high producing strain	0.136
DRR006522	Root Winter glycyrrhizin high producing strain	0.177
DRR006523	Root Summer glycyrrhizin low producing strain	24.135
DRR006524	Root Summer glycyrrhizin low producing strain	24.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.677

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.597
SRR2868004	Drought Stress (root)	9.000
SRR2967015	Control (root)	13.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.311
SRR9715740	Leaf	1.158
SRR9715741	Leaf	2.716
SRR9715739	Root	25.811
SRR9715742	Root	36.372
SRR9715743	Root	30.776

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.278
SRR8749028	MeJA induced 9h	23.807
SRR8749029	MeJA induced 9h	31.664
SRR8749030	Uninduced	6.554
SRR8749031	Uninduced	2.255
SRR8749032	Uninduced	5.481

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.481
SRR8400027	Control - Root	33.810