Gene detail information of Glyur002253s00044264 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45130.1 | 1.00E-42 | SPX domain gene 3 |
| NR | XP_007134741.1 | 9.52E-111 | hypothetical protein PHAVU_010G0720000g, partial [Phaseolus vulgaris] |
| Swissprot | tr|Q5PP62|SPX3_ARATH | 2.00E-65 | SPX domain-containing protein 3 |
| trEMBL | tr|V7AN83|V7AN83_PHAVU | 4.00E-111 | Uncharacterized protein {ECO:0000313|EMBL:ESW06735.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02253 | 34269 | 40843 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002253s00044264.1 | PF03105.14 | SPX | 29 | 91 | 1.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.565 |
| SRR1783600 | control | 0.402 |
| SRR1783602 | moderate drought stress | 2.037 |
| SRR1811619 | moderate drought stress | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.175 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.363 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.354 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.208 |
| SRR2868004 | Drought Stress (root) | 2.531 |
| SRR2967015 | Control (root) | 4.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.290 |
| SRR9715742 | Root | 0.934 |
| SRR9715743 | Root | 0.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.241 |
| SRR8400027 | Control - Root | 29.951 |