Gene detail

Gene detail information of Glyur002252s00036558

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16890.1	9.00E-21	disease resistance protein (TIR-NBS-LRR class), putative
NR	AES65510.2	1.17E-171	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
COG	YP_006866864.1	2.00E-07	lipoprotein, leucine rich repeat protein [Psychroflexus torquis ATCC 700755]
Swissprot	tr\|O23530\|SNC1_ARATH	1.00E-21	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|G7IQ97\|G7IQ97_MEDTR	4.00E-172	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES65510.2}

Sequence

Transcript Sequence

>Glyur002252s00036558.1
ATGGACAAATCTCTAATAAAAATTGATGGCAATGGTTGTGTGAGAATGCATGACTTAATTCAAGACATGGACGCAGTAGATTATGGCTGCAAGTTCTTAACTGAACTGCCTAGCTTTTCTGGAGTACCAAATTTGGGGGCATTGTGTCTTGATGATTGCACTAATTTAATTCGAATCCATGGCTCAGTTGGGTTTCTTGATAAACTTGTGTTGTTAAGTGCTCAAGGATGCAACCAACTAGAAATTTTGGCACCCTGCATCCACTTGCCATCTCTAGAGACTTTAGATCTTAGGGGTTGCTCACGTCTTGAGAGTTTCCCAGAAGTATTGGGAGTGATGGAGAATATAAGAGATGTTTATTTGGACCAGACTGCGATAGATAAATTACCATTTTCAATTGGAAATCTTGTTGGGCTCCAAAGGTTATTCTTGAGGGAATGCTACAGGCTGATTCAGCTACCAAATATTATTCATATATTGCCTAAACTTGAGATAATTATGGCTCACAGTAGTAAGGGATTTCGATTATTTGACGACAAAGAAAAAGTTGGTTCAAAAGTATTTCCAGAAGCCATGATTGTTTATAATAAAGGCAAGAGGATCTTACATGATGTGTGTTCTCTTAACACATGCCCCAATAATGTCATAGAAATATGTAGACCTCCGTCTGGGGGTAGTGATTTAGCATTCATGTTTGAAGGGATACTAGAAGGGAGAGTGAAATGGTACAAGCTCGGAAGAAAAGAATCATCCATGTGTTTTTGGTTTCGAAAGAAATTCCCCCAAATAGCTCTATGTTGTGCTGGAGATCCTCGAATGTATAAGGATGGCATGGTGTTTGATTTCAAGTTGAGTATACTCGTCAATGGTACTAAGCAATTCACTTCATTTAACTACATATTTTCTTCAGGAAGAATATCGGAACAGATACTTTTGTGTGACATAGTATGCAAAGCGGAAAGTGAATTTTCAGAACATGAATGGAATCAAGTAGAGATTTTATGTGAGCTTAAGTACCACATGCCATGTGGCTCTGAAAGGGTAATGGCCACCCACGATGAAAGGACCGCAATGAGTATTCCAAGTTGGTCCCTTCTTTATGTCTACGAAGAATACAAGGAGGATGTCAAATTTTTGTCTCCGCTTCAAGAAGGTAGAGAGGTGCAGCAGATAATAATGGACTCACTACTGGTATTTCGCTCCTTACGCGACTTGAAGAAGAAGATTGGATGGGCGGCGAAGGTCACCCCGGAGCTGGTTGATGGTGCGACGACGAAGGGAAGCGCAGTTTCGCGGCGGCAGCAGGGTTCACGCGGGTTGAGAGAGAGAGAGAGAAACAGAGCTGATGAGCAAATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02252	25508	28313	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.289
SRR1783600	control	0.155
SRR1783602	moderate drought stress	0.813
SRR1811619	moderate drought stress	1.006

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.288
DRR006520	Root Summer glycyrrhizin high producing strain	1.196
DRR006521	Root Winter glycyrrhizin high producing strain	0.570
DRR006522	Root Winter glycyrrhizin high producing strain	0.564
DRR006523	Root Summer glycyrrhizin low producing strain	0.271
DRR006524	Root Summer glycyrrhizin low producing strain	0.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.026

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.381
SRR2868004	Drought Stress (root)	0.492
SRR2967015	Control (root)	0.329

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.217
SRR9715740	Leaf	27.495
SRR9715741	Leaf	35.124
SRR9715739	Root	0.423
SRR9715742	Root	4.226
SRR9715743	Root	4.701

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.190
SRR8749028	MeJA induced 9h	0.153
SRR8749029	MeJA induced 9h	0.280
SRR8749030	Uninduced	0.206
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.437
SRR8400027	Control - Root	4.949