Gene detail information of Glyur002252s00036556 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17970.1 | 2.00E-20 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_003595272.1 | 3.39E-41 | Heat shock protein [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 6.00E-21 | TMV resistance protein N |
| trEMBL | tr|A0A072V625|A0A072V625_MEDTR | 1.00E-41 | Animal HSPA9 nucleotide-binding domain protein {ECO:0000313|EMBL:KEH37494.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02252 | 17632 | 25070 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002252s00036556.1 | PF01582.15 | TIR | 33 | 113 | 1.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.559 |
| SRR1783600 | control | 0.690 |
| SRR1783602 | moderate drought stress | 0.304 |
| SRR1811619 | moderate drought stress | 0.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.726 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.696 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.234 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.357 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.362 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.328 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.232 |
| SRR2868004 | Drought Stress (root) | 3.656 |
| SRR2967015 | Control (root) | 7.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.838 |
| SRR9715740 | Leaf | 10.585 |
| SRR9715741 | Leaf | 13.779 |
| SRR9715739 | Root | 0.262 |
| SRR9715742 | Root | 4.535 |
| SRR9715743 | Root | 2.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.879 |
| SRR8749028 | MeJA induced 9h | 1.150 |
| SRR8749029 | MeJA induced 9h | 1.474 |
| SRR8749030 | Uninduced | 0.491 |
| SRR8749031 | Uninduced | 0.359 |
| SRR8749032 | Uninduced | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.320 |
| SRR8400027 | Control - Root | 3.465 |