Gene detail information of Glyur002246s00039723 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44310.1 | 4.00E-34 | Calcium-binding EF-hand family protein |
| NR | XP_004492137.1 | 7.27E-83 | PREDICTED: uncharacterized protein LOC101504669 [Cicer arietinum] |
| trEMBL | tr|I1N566|I1N566_SOYBN | 1.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G52740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02246 | 3619 | 4032 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002246s00039723.1 | PF13499.1 | EF-hand_7 | 28 | 95 | 2.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.046 |
| SRR1811619 | moderate drought stress | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.804 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.227 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.647 |
| SRR2868004 | Drought Stress (root) | 0.406 |
| SRR2967015 | Control (root) | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.161 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.005 |
| SRR9715739 | Root | 0.714 |
| SRR9715742 | Root | 0.687 |
| SRR9715743 | Root | 1.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.983 |
| SRR8749028 | MeJA induced 9h | 143.920 |
| SRR8749029 | MeJA induced 9h | 211.629 |
| SRR8749030 | Uninduced | 33.478 |
| SRR8749031 | Uninduced | 112.901 |
| SRR8749032 | Uninduced | 346.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.990 |
| SRR8400027 | Control - Root | 0.861 |