Gene detail information of Glyur002243s00038744 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31985.1 | 6.00E-21 | Ribosomal protein L39 family protein |
| NR | KHN44040.1 | 5.19E-29 | 60S ribosomal protein L39 [Glycine soja] |
| COG | YP_006861875.1 | 8.00E-07 | 50S ribosomal protein L39e [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|P51425|RL39_MAIZE | 5.00E-30 | 60S ribosomal protein L39 |
| trEMBL | tr|I1H0E5|I1H0E5_BRADI | 3.00E-29 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G47500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02243 | 10858 | 11734 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002243s00038744.1 | PF00832.15 | Ribosomal_L39 | 32 | 73 | 9.00E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.564 |
| SRR1783600 | control | 49.715 |
| SRR1783602 | moderate drought stress | 51.579 |
| SRR1811619 | moderate drought stress | 52.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.281 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 101.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 100.648 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.213 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.262 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.270 |
| SRR2868004 | Drought Stress (root) | 99.101 |
| SRR2967015 | Control (root) | 80.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.743 |
| SRR9715740 | Leaf | 50.214 |
| SRR9715741 | Leaf | 45.395 |
| SRR9715739 | Root | 35.710 |
| SRR9715742 | Root | 36.782 |
| SRR9715743 | Root | 39.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.086 |
| SRR8749028 | MeJA induced 9h | 16.027 |
| SRR8749029 | MeJA induced 9h | 23.205 |
| SRR8749030 | Uninduced | 9.827 |
| SRR8749031 | Uninduced | 7.364 |
| SRR8749032 | Uninduced | 11.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 81.045 |
| SRR8400027 | Control - Root | 66.148 |