Gene detail information of Glyur002239s00038678 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21550.1 | 2.00E-30 | Calcium-binding EF-hand family protein |
| NR | KEH35357.1 | 3.85E-71 | EF hand calcium-binding family protein [Medicago truncatula] |
| COG | YP_007118813.1 | 4.00E-06 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9LPK5|CML44_ARATH | 3.00E-40 | Probable calcium-binding protein CML44 |
| trEMBL | tr|A0A072V0Q8|A0A072V0Q8_MEDTR | 1.00E-71 | EF hand calcium-binding family protein {ECO:0000313|EMBL:KEH35357.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02239 | 17769 | 18290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002239s00038678.1 | PF13499.1 | EF-hand_7 | 13 | 123 | 1.50E-08 |
| Glyur002239s00038678.1 | PF13202.1 | EF-hand_5 | 145 | 164 | 0.0093 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.994 |
| SRR1783600 | control | 1.948 |
| SRR1783602 | moderate drought stress | 1.865 |
| SRR1811619 | moderate drought stress | 1.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.455 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.539 |
| SRR2868004 | Drought Stress (root) | 19.591 |
| SRR2967015 | Control (root) | 19.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.947 |
| SRR9715740 | Leaf | 0.220 |
| SRR9715741 | Leaf | 1.185 |
| SRR9715739 | Root | 6.731 |
| SRR9715742 | Root | 5.055 |
| SRR9715743 | Root | 3.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.143 |
| SRR8749028 | MeJA induced 9h | 38.331 |
| SRR8749029 | MeJA induced 9h | 22.040 |
| SRR8749030 | Uninduced | 52.274 |
| SRR8749031 | Uninduced | 166.523 |
| SRR8749032 | Uninduced | 97.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.641 |
| SRR8400027 | Control - Root | 3.985 |