Gene detail information of Glyur002238s00033933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02750.1 | 2.00E-121 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004504105.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cicer arietinum] |
| Swissprot | tr|Q9SY02|PP301_ARATH | 6.00E-147 | Pentatricopeptide repeat-containing protein At4g02750 |
| trEMBL | tr|A0A072TUD6|A0A072TUD6_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH20791.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02238 | 42841 | 45243 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002238s00033933.1 | PF01535.15 | PPR | 67 | 96 | 7.30E-06 |
| Glyur002238s00033933.1 | PF01535.15 | PPR | 98 | 126 | 5.40E-06 |
| Glyur002238s00033933.1 | PF01535.15 | PPR | 130 | 155 | 3.40E-08 |
| Glyur002238s00033933.1 | PF13812.1 | PPR_3 | 159 | 190 | 0.019 |
| Glyur002238s00033933.1 | PF01535.15 | PPR | 194 | 221 | 9.00E-08 |
| Glyur002238s00033933.1 | PF13041.1 | PPR_2 | 222 | 253 | 1.70E-07 |
| Glyur002238s00033933.1 | PF13041.1 | PPR_2 | 256 | 301 | 1.40E-11 |
| Glyur002238s00033933.1 | PF13041.1 | PPR_2 | 354 | 402 | 4.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.401 |
| SRR1783600 | control | 1.436 |
| SRR1783602 | moderate drought stress | 2.301 |
| SRR1811619 | moderate drought stress | 2.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.356 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.272 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.856 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.715 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.116 |
| SRR2868004 | Drought Stress (root) | 0.692 |
| SRR2967015 | Control (root) | 0.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.174 |
| SRR9715740 | Leaf | 0.434 |
| SRR9715741 | Leaf | 0.387 |
| SRR9715739 | Root | 1.337 |
| SRR9715742 | Root | 1.150 |
| SRR9715743 | Root | 0.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.615 |
| SRR8749028 | MeJA induced 9h | 0.993 |
| SRR8749029 | MeJA induced 9h | 2.113 |
| SRR8749030 | Uninduced | 0.278 |
| SRR8749031 | Uninduced | 0.166 |
| SRR8749032 | Uninduced | 0.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.594 |
| SRR8400027 | Control - Root | 1.766 |