Gene detail

Gene detail information of Glyur002238s00033930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65270.1	1.00E-107	RAB GTPase homolog A4A
NR	Q40191.1	2.70E-158	RecName: Full=Ras-related protein Rab11A; Flags: Precursor [Lotus japonicus]
COG	YP_008431664.1	2.00E-26	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q40191\|RB11A_LOTJA	1.00E-160	Ras-related protein Rab11A (Precursor)
trEMBL	tr\|Q39844\|Q39844_SOYBN	4.00E-157	Small GTP-binding protein {ECO:0000313\|EMBL:AAB97114.1} (Fragment)

Sequence

Transcript Sequence

>Glyur002238s00033930.1
ACAGAAAAGAGCCTCACCTTTCAGAAGATCCATCCGATTATTATCCAATATTTAACTCATTTATTAGTTTTAACCTTGAAGCAAAAGAAACACCGTAACAGAGATACTATATATATATATAANCAGAACAGATTACAGAAGATATCTTATACCGTGTGATAATAATAATTGATACATAGGAGAGGCAGAGATATTGTGAGAAAGAGAAGAAAAGTGGNAAAAAAATGGCAAGTGCAGGAGGTTATGGAGATGGTGCGAACCAGAAGATAGACTATGTGTTCAAGGTGGTGCTGATAGGGGACTCAGCGGTGGGGAAGTCACAGATACTGGCTAGGTTTGCGAGGAACGAGTTCAGCTTGGACTCAAAGTCCACGATTGGNGTTGAATTCCAGACACGGACTTTGGTCATCGATCACAAGACCGTCAAGGCTCAGATCTGGGACACTGCAGGCCAAGAACGATACAGAGCAGTTACAAGTGCATATTACAGGGGTGCTGTNGGGGCAATGTTGGTTTATGACATCACAAAACGTCAGACCTTTGATCATATACCCCGTTGGCTAGAAGAACTGCGTAACCATGCCGACAAGAACATAGTCATCATTCTCATAGGAAACAAATGTGATCTTGAGAACCAGCGTGATGTACCCACNGAGGATGCAAAAGAATTTGCCGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCGGCATTAGAAGCAACTAATGTTGAAACGGCCTTCGTGACTGTCTTGACAGAAATCTACAACATTGTAAACAAGAAGAACCTTGCTGCTGATGAAAGTCAGGGAAATGGGAGCTCGGCATCTCTGTCTGGGCAGAAAATTATTATTCCAGGCCCTGCACAGGAAATCCCTGCTAAGAGGATTATGTGCTGTCAAGCATCCTGAGTTTAATTTTTTAATTTGTTTCAATGTAGTGTATTTCATGTCTCAATGTTACTATTACCAAATTTTAAAGGTTTGGCACATTTCCTTTTGTACATTTTAATTTTAATTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02238	21935	24071	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002238s00033930.1	PF00071.17	Ras	20	180	6.40E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.063
SRR1783600	control	50.466
SRR1783602	moderate drought stress	34.007
SRR1811619	moderate drought stress	33.700

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	140.723
DRR006520	Root Summer glycyrrhizin high producing strain	138.343
DRR006521	Root Winter glycyrrhizin high producing strain	42.755
DRR006522	Root Winter glycyrrhizin high producing strain	41.130
DRR006523	Root Summer glycyrrhizin low producing strain	229.770
DRR006524	Root Summer glycyrrhizin low producing strain	226.808
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.258
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.395

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.089
SRR2868004	Drought Stress (root)	66.194
SRR2967015	Control (root)	76.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.585
SRR9715740	Leaf	50.934
SRR9715741	Leaf	64.052
SRR9715739	Root	39.588
SRR9715742	Root	82.474
SRR9715743	Root	83.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	112.470
SRR8749028	MeJA induced 9h	74.698
SRR8749029	MeJA induced 9h	176.826
SRR8749030	Uninduced	44.709
SRR8749031	Uninduced	26.858
SRR8749032	Uninduced	28.602

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	97.806
SRR8400027	Control - Root	115.654