Gene detail

Gene detail information of Glyur002238s00033928

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65260.1	8.00E-76	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003525045.1	9.87E-136	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Glycine max]
COG	YP_004346183.1	9.00E-08	RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
Swissprot	tr\|Q9LX90\|PABN3_ARATH	2.00E-117	Polyadenylate-binding protein 3 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|K7KQW5\|K7KQW5_SOYBN	4.00E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31026.1}

Sequence

Transcript Sequence

>Glyur002238s00033928.1
CAGAAACACGGTTTCATTCATCGCCCTAAATTGCGTTGCAGTAGTAGTAGAGGTTGTTTGGGTTGGTTGCGTAGAGAATCGGAGGATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCAGACGTTGGAGAGATGGAAGGAGACGTCGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGCTTGAAGGAAATGGAAGAGGAAGCTGCCGCTCTTCGCGAGATGCAAGCCAAGGTTGAGAAGGAGATTGGCTCCGTTCAAGATCCTGCTACTGCAGCTGCTTCACAGGCAAACAGGGAGGAGGCAGATGCTCGGTCTGTTTTTGTTGGCAATCTGGAAGTAATATGTGTTAAAGATGCCTCAACTTCACCACTGGAGGAGACAGCCTGTGGTTCTTTCGGAAGAACATTATATAAGGTTAGGGCTGTTGTGAATAGCTATGAAGAGAAGGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTCCAATCATGTGGTACNGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAAGCTCTCCTGTTGAATGAATCTGAATTGCATGGTCGTCAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGATTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCGTACGGATATGGGAAGGTTCCTAGGTTTAGAAGGNCATCTCGTTACATGCCCTACTACTAGAAGTTCATAAGGAATGGTGTTAAAAGATTTGATAATAGGTGCATCCTGGAGTAATAATNTTTTAATCCGGGGAGCATATAGCCATGCTAGTCTTCTTCCTCTTNGATTGAGAACATTTATTGTCCATTTGTCTCATGATGTTATTAGTCTCGTATTTTTCTTGCTAGGTCCTGGGACAGTTTATAATTGCCATGGAATTTTATGTCAGTGACATGGTGCTGCAGGGTCAGTTTTTATAGTTTATACTGACCATAGATATATGTATGCTGCAGCAAACTCATCTGGCCTCTTACCCTATCCAGTGGCACCAAAACTTGATTAGAACCTGTTGTTGAAATCTATATAATCGTATCCGAATTTAAATTTAATGGAGTATTTTGAGTTTATGATGTATGACGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02238	14462	18323	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002238s00033928.1	PF00076.17	RRM_1	134	196	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.577
SRR1783600	control	9.664
SRR1783602	moderate drought stress	10.545
SRR1811619	moderate drought stress	10.051

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.117
DRR006520	Root Summer glycyrrhizin high producing strain	17.012
DRR006521	Root Winter glycyrrhizin high producing strain	21.593
DRR006522	Root Winter glycyrrhizin high producing strain	20.046
DRR006523	Root Summer glycyrrhizin low producing strain	19.059
DRR006524	Root Summer glycyrrhizin low producing strain	18.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.589
SRR2868004	Drought Stress (root)	33.528
SRR2967015	Control (root)	32.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.831
SRR9715740	Leaf	17.110
SRR9715741	Leaf	20.745
SRR9715739	Root	10.246
SRR9715742	Root	11.536
SRR9715743	Root	10.287

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.444
SRR8749028	MeJA induced 9h	37.425
SRR8749029	MeJA induced 9h	52.766
SRR8749030	Uninduced	42.735
SRR8749031	Uninduced	40.057
SRR8749032	Uninduced	59.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.686
SRR8400027	Control - Root	28.610