Gene detail

Gene detail information of Glyur002236s00041373.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05460.1	9.00E-51	RNI-like superfamily protein
NR	KEH34671.1	4.53E-76	F-box/LRR protein [Medicago truncatula]
Swissprot	tr\|Q9M0U9\|SKI19_ARATH	2.00E-60	F-box protein SKIP19
trEMBL	tr\|A0A072UZ00\|A0A072UZ00_MEDTR	2.00E-76	F-box/LRR protein {ECO:0000313\|EMBL:KEH34671.1}

Sequence

Transcript Sequence

>Glyur002236s00041373.1
CCCTAATGTAACCAGAATCCTTCTCTCTCCGCAGCTCTGCTTCTCACTCAAACAGCGAAGTTTGCTTGCTTCCGTCCTCACTTCTTCACTTCCCGTCATGCGGCCGTTTGAGTCCAGAACCCAGGAAAATCCTGAAAGCTAGTTTGGTCTTACTAAATGCTCTGCAGCGGCAAATGGCAATATTATAAAGTTCCTTTTGATATTTTTTAGTATTTGTCATTTAAAAAGCACAACTGAACTGAATATGGATCTAATTAAGGCTAAAACATCAGCACACATATTTTCAAAGTGATTTGTTTGGGCAGCCATATCAGTTCCCACATCTATAAAAGTTTATCAGAAAGCGTGTGATCCCTACTCTCCACGGCTGTTTCCACTTCAAAGCGGTTAAGCACGCACTGCTGGTTGTTTTGACTGAATGCGTGATGGCGTCGTGTTCATCGAGTCCAGCGAAGAGATTGAAAGGTGAGAGCACAACAAGGGATCCAAACTGGCATGAACTTCCGAGAGACGTCACAGCAAACATACTCCACAGGCTTGACATTCTCGAAAGAGTGAGGAGTGCACGTAGGGTGTGCTCTGAGTGGCGGAACATTTTCAAGGACCCTCTCATGTGGCATTCCATTGACATGAGCTTTCACTACTCTTTATGGGGTGATTATTTGGTGGACATTTGTCGCTATGCCGTTGGCCAAAGTGATGGTCATGTGGAAAACATTGATATTGACGATTTTGCGACCGATGATCTCCTCAAATACATAGCCAATAGTGCAAGTCACCTTCGATGCATACGGCTTGGAAACTGCCATAAGATTTCAGATAAAGGATTGAGTGAATTTATCAAGAAAGCTCCATTGTTAGAGGAACTTGAAGTTTCGTATTGCTATCATATTTTGAAGGACTCTCTTGAAGTTATTGGCCAATGTTGCCCTCTTTTAAAGTCGCTGAAATTTTGTCATTTCCAAGAGGAGTTTTTTGAGGAAGATGGAGTTGCGTTAGCTATTATTGGAAGAACAATGTCTGGGCTGCGTCGTCTTAAGCTTTCTGGAAATACGCCCAGTAATGTTGGGTTGCGAGCCGTTCTTGACGGTTGTCCACTTTTTGAATCTCTTGATCTGGAACAATGTTACCACTTCCAATTGGATGGAAGTTTGGAGAAAAGGTGTCATCAGCAGATCAAAGATTTATATCTTCCAGCTGACTCTGAATTTGATTGGTATTTCTAGACATGACAAGGGCACTAATGCTTTATGTGGCTTCTTTTGCTTTCAAATTTGATTTGGAGATTGGTGTCTGTTGCTTCAATTTAGTTTTCTGAATTTAATTTTCTGAATACAGTGGGGTAATATGCTTTTGGTAATATGCTTCAAGTTGATTATAATTTGCTTTACGTAAGCATATTGGACCTTCCCCTGTATAGTCATGACGTAGTTATTGCTATGCTTTGTTGTGCTGCTTGTGCATTTAACATCAAATGGTGCATTTTTGTTTTTATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02236	14356	16387	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002236s00041373.1	PF12937.2	F-box-like	23	68	2.20E-07
Glyur002236s00041373.1	PF13516.1	LRR_6	117	138	1.4

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.972
SRR1783600	control	8.864
SRR1783602	moderate drought stress	5.928
SRR1811619	moderate drought stress	6.284

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.822
DRR006520	Root Summer glycyrrhizin high producing strain	21.573
DRR006521	Root Winter glycyrrhizin high producing strain	17.662
DRR006522	Root Winter glycyrrhizin high producing strain	17.359
DRR006523	Root Summer glycyrrhizin low producing strain	7.251
DRR006524	Root Summer glycyrrhizin low producing strain	7.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.953

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.003
SRR2868004	Drought Stress (root)	25.843
SRR2967015	Control (root)	22.729

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.558
SRR9715740	Leaf	4.190
SRR9715741	Leaf	2.929
SRR9715739	Root	3.712
SRR9715742	Root	5.595
SRR9715743	Root	6.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.738
SRR8749028	MeJA induced 9h	20.345
SRR8749029	MeJA induced 9h	11.025
SRR8749030	Uninduced	5.344
SRR8749031	Uninduced	1.705
SRR8749032	Uninduced	1.987

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.442
SRR8400027	Control - Root	11.166