Gene detail information of Glyur002236s00041372.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05460.1 | 2.00E-47 | RNI-like superfamily protein |
| NR | KEH34672.1 | 1.06E-79 | F-box/LRR protein [Medicago truncatula] |
| Swissprot | tr|Q9M0U9|SKI19_ARATH | 4.00E-58 | F-box protein SKIP19 |
| trEMBL | tr|A0A072UYK8|A0A072UYK8_MEDTR | 4.00E-80 | F-box/LRR protein {ECO:0000313|EMBL:KEH34672.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02236 | 8095 | 9412 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002236s00041372.1 | PF12937.2 | F-box-like | 24 | 68 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 1.467 |
| SRR1811619 | moderate drought stress | 1.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.332 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.471 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.478 |
| SRR2868004 | Drought Stress (root) | 0.256 |
| SRR2967015 | Control (root) | 0.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.732 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 2.823 |
| SRR9715739 | Root | 0.113 |
| SRR9715742 | Root | 1.820 |
| SRR9715743 | Root | 2.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.040 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.072 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.263 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.141 |
| SRR8400027 | Control - Root | 1.297 |